Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00850 ATGCCGAAGGTTAAAGCCGACGCGAAAGCTGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAACCGGAAGGAAGCAGGCTAAGAAAGCTAAGGATCCTAACAAGCCGAAGAGGCCTCCAAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAGTACAAGAAGGAGCACCCAAGCAACAAATCCGTTGCAGTTGTTGGCAAGGCTGGTGGTGACAGGTGGAAATCAATGTCTGATGCTGATAAAGCTCCCTACCAAGCTAAGGCAGAGAAAAAGAAAGAGGAGTATGAAAGGAGTATGCAAGCCTACAACAAAAAACAGGAGAGTAAGGGTGCTTCTGAGGAAGATGAATCTGACAAGTCAAAGTCTGAAGTAAATGATGAGGATGAGGATGAGGAGGATGATGATGACGAGAAGGGAGCGGCGTTGGCAGGACTGGGAGCCGCCGTCGCCGTCGAGTCATTGAGAAAGAGAGAAAAAGGCTGCAACTGGAAGGAGAGAGAGAGAAGCTGCCTTGCGTCTTGCTGTCTCCGTCGTCCTCATCTCGAATCGCCATCATCGCCGGTGCAGGGAGAGGAGCCGTCGCGCCGCCGCCGCTGTTGGGTCGCCATGCTGTGCCGCCGCCGCTGTGGGGTCGTCGTGCTATCGTCAGAGAGTAGAGGGCATACGCGAGGAAGGAGAAGCCCTGCCTTCATGTCCGCCGCCGCTGCCTCTGAGTCCGTCTCCGTCAAGCAGAGCCACGGGCAGAGGGGAGATATCCGCGAGGAAGGGAGGACCGCGACCCGTCCAGCCGCCACGCACAGTTGCCGCTCGTGTCGCCAGCGCCATCCTTGTCAAATTCGCTACCTTCGAAACTTCTGGCCGCAGaggtga 876 0.5559 MPKVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPSNKSVAVVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERSMQAYNKKQESKGASEEDESDKSKSEVNDEDEDEEDDDDEKGAALAGLGAAVAVESLRKREKGCNWKERERSCLASCCLRRPHLESPSSPVQGEEPSRRRRCWVAMLCRRRCGVVVLSSESRGHTRGRRSPAFMSAAAASESVSVKQSHGQRGDIREEGRTATRPAATHSCRSCRQRHPCQIRYLRNFWPQR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00850 291 MobiDBLite consensus disorder prediction 238 267 - -
Adu01g00850 291 CDD HMGB-UBF_HMG-box 36 87 - -
Adu01g00850 291 SMART hmgende2 35 106 IPR009071 -
Adu01g00850 291 SUPERFAMILY HMG-box 22 106 IPR036910 -
Adu01g00850 291 MobiDBLite consensus disorder prediction 1 42 - -
Adu01g00850 291 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 105 IPR009071 -
Adu01g00850 291 MobiDBLite consensus disorder prediction 54 140 - -
Adu01g00850 291 MobiDBLite consensus disorder prediction 122 140 - -
Adu01g00850 291 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 139 - -
Adu01g00850 291 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 139 IPR031061 -
Adu01g00850 291 Gene3D High mobility group box domain 21 124 IPR036910 -
Adu01g00850 291 Pfam HMG (high mobility group) box 36 105 IPR009071 -
Adu01g00850 291 MobiDBLite consensus disorder prediction 1 36 - -
Adu01g00850 291 MobiDBLite consensus disorder prediction 75 121 - -
Adu01g00850 291 Coils Coil 87 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00850 Adu-Chr1 11376556 11381514 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Adu01g00850 HMG_box 5.5e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00850 K25507 K22507 ahf:112797235 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00850 01 11376556 11381514 Adu01g00850 01 11376556 11381514 ECH