Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00843 ATGGGAGGTGACAGTGCCGCAGAGAGGTCTACGGATTCAAAGGTCTCTGAACCCGTCAGCATCAACATTCGGTGTTCCAATGGTTCCAAGTTCTCGGTTCAGATTTGCCTCGATTCCACCGTCGGATCCTTCAAGGAAGTCATTGCTGGCAGCTGCGATATCCCAGCCGGTCAGCAGCGCCTGATTTACAAGGGTCGGATCCTGAAGGATGATCAGACCCTACAAAGCTATGGCTTGGAGGCAGATCACACCATCCATTTGGTTCGTGGCTTCACACCTTCCAATACAGGTGGGGGCACAAATACCAGTGGCACCAATACCGCCACGACTAATGCCAGAAGTACTGGTGCTGCTGAGGGTGGGGGCTTAGGAGGCCTTGGTTTTGGAGCTTCATTGTTCCCTGGATTAGGTTTGAATGGGATGGGTGGCAATAACCTATTTGGAGAGGGATTTCCGGATCTTGAGCAGATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATTATGAACACACCTGCTATGCAGAACCTAATAAATAATCCTGAGATTGTGCGGAATCTTATAATGAGCAACCCGCAGATGCAGGAGCTCATGGATCGGAATCCTGAGTTAGCTCACATACTTAATGATCCAAGCACCCTCCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATTATGCGTGAAATGATGAGAAATACCGACAGAGCAATGAGCAACATTGAAGCATCTCCTGAGGGATTTAACATGTTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCTACTACGATGGCTGGAAACACAGGAGGCAACAATACACCACTTTCTGGGACTCAAGCCAGGGACCAATCAACAAATCCCTCAACTACTAGCTCCGAAGCAACTGCTGGTTCTCCATTACCCAATACTAACCCACTCCCCAATCCTTGGTCCTCTACGGGAACTGGTGGTGCCCAAAATAACAATAGAAGGTCAACCCCTGCTGGTGGGGATGCTAGGCCGCAGGCACCTACTGGCTTAGGAGGGCTTGGACTGCCGGATCTTCAAGGCATGCTGGGCGGCAATGCTATGCCAGATCCTGCTTTAATGGCCCAGTTAATGCAAAATCCAGCTATCTCAAACATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATGCTTGGAGCTAATGCTGATCAGCGTGGCATGCCTGATTTGAATTCTCTTAGAGAAGTGATGCAAAATCCAGAGTTCCTTCGCTTATTTTCTTCACCTGAGACACTGCAGCAACTGATGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAACAACAGCCACGGTAA 1356 0.4801 MGGDSAAERSTDSKVSEPVSINIRCSNGSKFSVQICLDSTVGSFKEVIAGSCDIPAGQQRLIYKGRILKDDQTLQSYGLEADHTIHLVRGFTPSNTGGGTNTSGTNTATTNARSTGAAEGGGLGGLGFGASLFPGLGLNGMGGNNLFGEGFPDLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIEASPEGFNMLRRMYENVQEPFLNATTMAGNTGGNNTPLSGTQARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNNRRSTPAGGDARPQAPTGLGGLGLPDLQGMLGGNAMPDPALMAQLMQNPAISNMMQSMLSNPQTLNQMLGANADQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLMSFQQALLSQLGQQQPR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00843 451 Gene3D - 189 247 - -
Adu01g00843 451 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Adu01g00843 451 PANTHER UBIQUILIN 3 449 - -
Adu01g00843 451 SMART CBM 144 181 IPR006636 -
Adu01g00843 451 SMART CBM 399 434 IPR006636 -
Adu01g00843 451 SMART CBM 194 233 IPR006636 -
Adu01g00843 451 SMART CBM 343 396 IPR006636 -
Adu01g00843 451 MobiDBLite consensus disorder prediction 269 335 - -
Adu01g00843 451 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Adu01g00843 451 CDD Ubl_Dsk2p_like 19 91 - -
Adu01g00843 451 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 449 - -
Adu01g00843 451 SMART ubq_7 19 90 IPR000626 GO:0005515
Adu01g00843 451 MobiDBLite consensus disorder prediction 269 352 - -
Adu01g00843 451 Gene3D - 6 102 - -
Adu01g00843 451 SUPERFAMILY Ubiquitin-like 13 105 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00843 Adu-Chr1 11283979 11288389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00843 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.51e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00843 K04523 - gmx:100776447 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00843 01 11283979 11288389 Adu01g00843 01 11283979 11288389 ECH
Adu05g00346 05 3670655 3675153 Adu01g00843 01 11283979 11288389 PCT