Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00842 ATGAGAGTCCCCTTCCCTTACCGAAGGTTCTTATCTCGAGCGTCTTGGCAATCACCTTCCCTTACCGAAGGATCATCTCGATCGATCACCCTCCCTTACCGAGGGATCATCTCGATATCTTGTCTTTGGGGGTCACCTTCCCTTGCCGAAGGATCACTCCCTCAGTTCAATTTACAATCAAGGTTCCCAAAAGTTTACCGATCACCTTCCCTTATCGAAGATCATCTCGATTCGATCACCTTCCCTTACCGAAGGATCATCTCGATTATCTTGTCTTTGGGGCCCCTACCATTGTCGTTCACCTTCCTTCCAGCCCCTACTTCGTCACATCCCCCAAGATCGACGAAGGCAGAAACCCTAGCGTCGCCGAGCTCCTTTGTCGCGTCTCACTGCGAGCTTCCTGTCACCACAAGAAAGAAGAGTAGGCGTCGCGCTCCTCCGCTATCCAGCCACCATCGAACTTCGAAGAGAGAGAGAAAGCTCATGAAGATGAGAGAGAGACGGCTGCTGCTGCCGTCTGAGCCGCCGCCAGGGGAAGCCGCTGCCGTCGTTACCACCACAGCACAAGAGAATCCACCACAGCAAGGAAAGGAACGTGTTTCGTATTCTACTAATGAGCAAAGTTTCAGGGAGGTTTTTGGAAAATATGGTGATGTTGTTGATGCAAGGATAATTGTGTACCGTGATTTTGGCAGATCCAGAGGATTTGGGTTTATTACTTACAGTTCGGTTGAGGAGGCGTCAAGTGCCATTCAGGCCTTAGATGGGCAGgaagacataatgtga 786 0.4987 MRVPFPYRRFLSRASWQSPSLTEGSSRSITLPYRGIISISCLWGSPSLAEGSLPQFNLQSRFPKVYRSPSLIEDHLDSITFPYRRIISIILSLGPLPLSFTFLPAPTSSHPPRSTKAETLASPSSFVASHCELPVTTRKKSRRRAPPLSSHHRTSKRERKLMKMRERRLLLPSEPPPGEAAAVVTTTAQENPPQQGKERVSYSTNEQSFREVFGKYGDVVDARIIVYRDFGRSRGFGFITYSSVEEASSAIQALDGQEDIM 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00842 261 Gene3D - 135 259 IPR012677 -
Adu01g00842 261 MobiDBLite consensus disorder prediction 140 161 - -
Adu01g00842 261 SMART rrm1_1 199 261 IPR000504 GO:0003723
Adu01g00842 261 SUPERFAMILY RNA-binding domain, RBD 200 258 IPR035979 GO:0003676
Adu01g00842 261 MobiDBLite consensus disorder prediction 136 161 - -
Adu01g00842 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 261 IPR000504 GO:0003723
Adu01g00842 261 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 200 258 - -
Adu01g00842 261 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 200 258 - -
Adu01g00842 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 258 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00842 Adu-Chr1 11264996 11271506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00842 198 256 Eukaryotic Initiation Factors Gene Family AT3G16380 42.373 1.53e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00842 K12741 - gmx:100799124 97.0561