Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00768 ATGGCGGAAGAGAGGTTCACCGGCGTTGTTATGTGGTTCAACAACACCAAGGGCTTCGGCTTCATCAAGCCCGACGATGGCGGCGAAGATCTCTTCGTCCACCAGTCTTCCATCAGATCCGACGGTTATCGCACTCTCCACGAAGGCGATCGCGTCCAGTTCTCCATCGCCACCGGCGACAACCACAAGACCAAGGCCGTTGATGTAACTGCTCCCGACGGCAATCCCCTACACTCTCGTCCCAAGGAATCCGGCGGATCCGGATTTGGCGCCGGATGGAGGCGAAACGGCGGCGCCAGTGGAGGTGGAGGTGGTGCTGCTGGATCAGGTGGCGCCGGGTGCTACCACTGCGGCGAAGTCGGACACCTGGCTAGGGATTGCAACCGGAGCAACAATTCTGGTGGCGCTGGTGGCGGTAGTGGTGGTGCATGTTTTAATTGCGGCGGATTTGGGCATCTCGCTAGGGATTGCTTGCGAGGAAGCGGTGGCGGTAACGGTAATGGTCACGGTGGTGGAGGTGTCGGTGGTGTTTCGTGCTTTAGATGCGGTGGATTTGGTCACATGGCGAGGGACTGTGCTACCGCGAGAACTAGCGGTGGTGCAGGTGGCGGCGCTGGTGGTGGTGGTTGCTATAGGTGCGGTGAGGTTGGTCACTTGGCTAGGGATTGCAGCAATGAAGGTGGAAGGTATGGTGGCGGAGGCGGCGGTGGCAATGGTAATGGTTCTAGAAGCACTTGCTTCAATTGTGGTAAGCCTGGGCATTTTGCAAGGGAGTGCGTTGAAGCCTCTGGTTGA 795 0.5862 MAEERFTGVVMWFNNTKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLHEGDRVQFSIATGDNHKTKAVDVTAPDGNPLHSRPKESGGSGFGAGWRRNGGASGGGGGAAGSGGAGCYHCGEVGHLARDCNRSNNSGGAGGGSGGACFNCGGFGHLARDCLRGSGGGNGNGHGGGGVGGVSCFRCGGFGHMARDCATARTSGGAGGGAGGGGCYRCGEVGHLARDCSNEGGRYGGGGGGGNGNGSRSTCFNCGKPGHFARECVEASG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00768 264 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Adu01g00768 264 SUPERFAMILY Retrovirus zinc finger-like domains 108 159 IPR036875 GO:0003676|GO:0008270
Adu01g00768 264 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 SMART c2hcfinal6 209 225 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 SMART c2hcfinal6 245 261 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 SMART c2hcfinal6 178 194 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 SMART csp_8 7 72 IPR011129 GO:0003676
Adu01g00768 264 ProSiteProfiles Zinc finger CCHC-type profile. 179 192 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 ProSiteProfiles Zinc finger CCHC-type profile. 144 157 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 Pfam Zinc knuckle 209 224 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 Pfam Zinc knuckle 178 193 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 Pfam Zinc knuckle 245 259 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 Pfam Zinc knuckle 143 157 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Adu01g00768 264 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Adu01g00768 264 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Adu01g00768 264 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 105 - -
Adu01g00768 264 PANTHER COLD SHOCK DOMAIN PROTEIN 2 100 172 - -
Adu01g00768 264 PANTHER COLD SHOCK DOMAIN PROTEIN 2 136 263 - -
Adu01g00768 264 PANTHER COLD SHOCK PROTEIN 2 136 263 - -
Adu01g00768 264 PANTHER COLD SHOCK PROTEIN 2 100 172 - -
Adu01g00768 264 PANTHER COLD SHOCK PROTEIN 2 1 105 - -
Adu01g00768 264 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Adu01g00768 264 SUPERFAMILY Retrovirus zinc finger-like domains 169 226 IPR036875 GO:0003676|GO:0008270
Adu01g00768 264 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Adu01g00768 264 ProSiteProfiles Zinc finger CCHC-type profile. 246 259 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Adu01g00768 264 SUPERFAMILY Retrovirus zinc finger-like domains 229 260 IPR036875 GO:0003676|GO:0008270
Adu01g00768 264 Gene3D - 1 70 IPR012340 -
Adu01g00768 264 Gene3D - 139 166 - -
Adu01g00768 264 Gene3D - 238 264 - -
Adu01g00768 264 Gene3D - 109 137 - -
Adu01g00768 264 ProSiteProfiles Zinc finger CCHC-type profile. 210 225 IPR001878 GO:0003676|GO:0008270
Adu01g00768 264 MobiDBLite consensus disorder prediction 66 102 - -
Adu01g00768 264 Gene3D - 171 237 - -
Adu01g00768 264 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00768 Adu-Chr1 10412506 10413640 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Adu01g00768 CSD 5.1e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00768 K09250 - gmx:106796585 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00768 01 10412506 10413640 Adu01g00768 01 10412506 10413640 ECH