Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00762 ATGGATCCTGGTCGCTATGGTCTTCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTATCGGGTTGGGGGTGCTTATGAGGATAGACGCTTTGTAGATGAAAGATATCCAAGGGATGCCATATACCAGAGAAATGCTTTCCATCGTGACATTTTGGATAGGGAGGGCTATATGCCACCAGGACCTCCTGTTGGCCACTGGAATCAATCCAAAAGGAGAGGTTATGAGGAAGATTATCCAATGGACAGAGAATCTAGACGTTTTCAGAGGCCTTATCATGAGCCGTATAATCAGATTGATGCCTACAGAGAAGCCGATATTGACACGTTCCCAGAATATGATAAGTTTCGAGATGGTTATGGCAGCATTGAAAATTATGGGGATCGAGGATATGATAAACCTGCCAGGTTTGGAGGACATGACCGTGATGATTATGCATATGATGACTATGGCTACAAGTCCCGTGCTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGCCGCCATAGTTATGATTCTGATTATGAAAGAGGCAGTAGAAGAGATAGTAACTGGAGGCGACGTGGATCACGTGATCGAGAACATGATAGAAGAGGTCTTAGTCGGGAAAGAGATGTAAGCCCGCGTAAGAGGCGTGAGCATTCTCATTCTAGGTCCCGGTCCCGTTCCCGGTCCCGGTCCAAATCTCAGTCCCATTCCCAATCCCGTTCCCAGTCTCGTGGATACGACGATCATCCAAGATCAAGGTCCCCTCGAGGTCGAAGCCATAGTCGGAGTTATAGAGAAGATAGCTATAGTGACAGTCGATACGATAGAAGTGAAAGACGCAGGGATCGTGAGGAAAAACGTCAGCGTGAACATTATTCAGTGGCCCCATCTGCAACTATTGTTGTGAAAGGTCTCTCACAGAAAACTACTGAGGAGGATCTGTACCAAATACTTGCGGAGTGGGGACCCCTTCGTCATGTTCGTGTTATAAAGGAAAGAAATTCTGGCATTTCTCGGGGATTTGCATTTATCGATTTTCCTTCTGTGGGAGCCGCACAAGCAATGATGGACAAGCTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAACCTACTGGTGGTCCAGGTCCTGATGGAGCTATGAAATCAGGCCATAATCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGTCGTACCTCCTGTTATCAGTGTAATGAGCCACGAACTGAGGATGCTCCTGCAGCAGATATTTCATTAACAAATTCATCAGCCATGGGGAAGAAGGGTCTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACACATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGGACTACTCTTGAGAAGAATGGACAAATTCTAAGAGTGGCATATGCTAAAAGTATCTTGGGCCCTGGATCAGGAGCACCAGGAACTTCACAATCAAGCAGCCTTGCAGCAGCTGCTATTGAGGCTGCGACATTTGCTCAACAGTATGATTCTGTGGGGTGGGCTCCAAAAGAATACAATCCCGATGATAAGCAAGCTACTGCTCCTGAGCAAAGCACCACAGGTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCCGGTTATTATTATGATGCAGCATCTGGGTTTTACTACGATGGAAATACTGGTCTTTACTACGATGGTAACAATGGGATATGGTATACGTATGACCACCAAACTCAACAGTACATCCCTTGCACTGAACAAAATCAAAACAACACAGCTAATCAGCAGTCTGAACCTTCCAAGGCATCTGATGGTGCCAGTAGTAAAAAGGTGGTAATTTCTGCACCGGCTTCTACTGTTGCATCAGTTGAGAAGCCTGCATCATTGGCAGATGCTGTGCAGGCTGCTGCAACGGCTGCTTTAGCTGCTGAGAAGAAAGAAAAAGAGAAGGCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTGTTGTCAATGTGGAAGCAGAGGAGCCATGAAGGGCAGGCTACTCGAGTAGCCTTGGAGGACAATCAACTCTCTGTTTCCACCGATGATAGGTCATACCCTACAAAGAACAAGTTAAAAGGTGAATCTATGCCTAGGGAAACCAACGTATCTAGCTTGGGAACACATACAACTGTTATCCAGGCTGCTGGTTTGGACTCTCAGGCACAGGCACGGCCTGTTAGTAATAGTCTTGGTGGAACTATTATGGGAGTTATAAGGGGTTCAGGAAGAGGGGTTGTCAAATCAGATAGCTACCCTGGTTCTACAGCTTCTCCGTCATCATTTTCAAGTTCTTCAGCTGCAAGTGTCGATGCACAGATAAGTTCAACTCCTTTTAGAACAGATGTCTCTGCCTTGGGTTCATATACACCATCAGTGGCTGCCGGAAGTGGCAGAAGAAGGTTTTCAGAAGCGCCTAGTTCCGCTTCAATTCATAAGGAGCAACCTCAAACAACCTATAGAGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCATCATCATCGGGTGGGAATGATTTGGCTGATTATGAAATTGGGGATTCAAGTAAGACTGCTTAA 2829 0.4539 MDPGRYGLHQGWDNNSALEGYGAVHEPNYRVGGAYEDRRFVDERYPRDAIYQRNAFHRDILDREGYMPPGPPVGHWNQSKRRGYEEDYPMDRESRRFQRPYHEPYNQIDAYREADIDTFPEYDKFRDGYGSIENYGDRGYDKPARFGGHDRDDYAYDDYGYKSRASHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRGSRDREHDRRGLSRERDVSPRKRREHSHSRSRSRSRSRSKSQSHSQSRSQSRGYDDHPRSRSPRGRSHSRSYREDSYSDSRYDRSERRRDREEKRQREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNHKSITIPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADISLTNSSAMGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGAPGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQATAPEQSTTGGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYTYDHQTQQYIPCTEQNQNNTANQQSEPSKASDGASSKKVVISAPASTVASVEKPASLADAVQAAATAALAAEKKEKEKAKEIKLASKSSILANKKKMNNVLSMWKQRSHEGQATRVALEDNQLSVSTDDRSYPTKNKLKGESMPRETNVSSLGTHTTVIQAAGLDSQAQARPVSNSLGGTIMGVIRGSGRGVVKSDSYPGSTASPSSFSSSSAASVDAQISSTPFRTDVSALGSYTPSVAAGSGRRRFSEAPSSASIHKEQPQTTYRDRAAERRSLYGSSSSGGNDLADYEIGDSSKTA 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00762 942 MobiDBLite consensus disorder prediction 252 302 - -
Adu01g00762 942 PANTHER RNA-BINDING PROTEIN 38 212 - -
Adu01g00762 942 SUPERFAMILY RNA-binding domain, RBD 463 549 IPR035979 GO:0003676
Adu01g00762 942 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 533 IPR000504 GO:0003723
Adu01g00762 942 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 370 IPR000504 GO:0003723
Adu01g00762 942 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 388 IPR000504 GO:0003723
Adu01g00762 942 Pfam OCRE domain 606 654 IPR041591 -
Adu01g00762 942 MobiDBLite consensus disorder prediction 835 856 - -
Adu01g00762 942 MobiDBLite consensus disorder prediction 581 607 - -
Adu01g00762 942 PANTHER FI21118P1 219 922 - -
Adu01g00762 942 PANTHER FI21118P1 38 212 - -
Adu01g00762 942 SMART zf_4 412 436 IPR001876 -
Adu01g00762 942 ProSitePatterns Zinc finger RanBP2-type signature. 414 433 IPR001876 -
Adu01g00762 942 MobiDBLite consensus disorder prediction 164 302 - -
Adu01g00762 942 MobiDBLite consensus disorder prediction 869 942 - -
Adu01g00762 942 Gene3D - 272 408 IPR012677 -
Adu01g00762 942 PANTHER RNA-BINDING PROTEIN 219 922 - -
Adu01g00762 942 SMART rrm1_1 466 541 IPR000504 GO:0003723
Adu01g00762 942 SMART rrm1_1 309 384 IPR000504 GO:0003723
Adu01g00762 942 MobiDBLite consensus disorder prediction 592 606 - -
Adu01g00762 942 MobiDBLite consensus disorder prediction 661 680 - -
Adu01g00762 942 MobiDBLite consensus disorder prediction 661 675 - -
Adu01g00762 942 CDD RRM1_RRM2_RBM5_like 306 386 - -
Adu01g00762 942 SUPERFAMILY RNA-binding domain, RBD 293 392 IPR035979 GO:0003676
Adu01g00762 942 MobiDBLite consensus disorder prediction 838 856 - -
Adu01g00762 942 Gene3D - 446 570 IPR012677 -
Adu01g00762 942 MobiDBLite consensus disorder prediction 227 243 - -
Adu01g00762 942 CDD OCRE_SUA_like 602 655 IPR035623 -
Adu01g00762 942 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 545 IPR000504 GO:0003723
Adu01g00762 942 ProSiteProfiles Zinc finger RanBP2 type profile. 410 439 IPR001876 -
Adu01g00762 942 MobiDBLite consensus disorder prediction 130 151 - -
Adu01g00762 942 MobiDBLite consensus disorder prediction 164 226 - -
Adu01g00762 942 CDD RRM1_RRM2_RBM5_like 463 543 - -
Adu01g00762 942 Gene3D - 409 440 - -
Adu01g00762 942 SUPERFAMILY Ran binding protein zinc finger-like 405 440 IPR036443 -
Adu01g00762 942 MobiDBLite consensus disorder prediction 765 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00762 Adu-Chr1 10309216 10317057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00762 307 529 Eukaryotic Initiation Factors Gene Family AT2G36660 25.200 7.59e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00762 K13094 - gmx:100787998 1415.98