Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00748 ATGTTACTTGATTATGAAGTAGAAGAGGTTTCACATGGTGACTTACAGAGTAACAAGGAAACACATGTGGATACCTCAAATCAAACCCCAGTTGACAAATCGACTACAAACCCAATTCAAAACCTCTCAACTGCAAACACAATTCCTTCTACTGCAACTCTCATTCCAAACCATCCTGCTGCTGACCCCCTCACTACAAATCCCACCAATGAAAAGCCAAACCCCATGGATGAACCTGGAAATCCCAAACCCAATTATATACCCAACCCAAAATCCAGTAGAAAATCCAACCCAGCTCCCATTGCAAAGGGGAAGAGCACCAACAAAGACAAGGGACCTCTTCATGTGGATTTAACTGTCAATAAATCAGAAAGTAGTGATGGCAGCTCAGAGGATACGTCTTATGTCCCAGTGCAAGAGGCTAGCTCTAGCAATGATGAAGAATTGGTTGCAAGAGTTTCGAAACCAATTAGGAAAGAGGTCAAAAAGTGCTCAATCACTCACTCATTCAAGTGTGTAGCTGATTTCGCTGAGGCTTCTTCTCTTGCTAATGTGAGGATGAGTTCCTTCTCCATCACACGGAAAAAGACACCATTTCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCTGAAGATGAGACTGCTCGTTTGTATGCCGAATTTGTAGAGTCATTTCAAGGTGATACCACTCCTGGGTCAAAGGCTTTTGTACGAGGAGGAACAATTAATCCCAATGATAAATTGAAGGATGATACTGAGGGTGAAAAGTCCAAAGATGGGGTTTCTGGTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCACCTCCAATGGCAACCAAGGGGAAAGAATCGGAAAGGAAAAAAGAGGAGGAAAAACCTAAGGACAAAGAGAAAGGAAAGTCGAGGAACATTGATCATTTCATGGAGGAGCTAAAGCACGAGCAAGAGATGAGGGAGAGGCGGAACCAAGAACGTGAACATTGGCGTGATGGGCGCGGAGAACATTCCACTTCAAGTCGCTTTGACGAACTACCTGATGACTTTGATCCAAGTGGAAGACTTCCTGGATCATTTGATGATGGCGATCCCCAAACTACGAATCTGTATGTTGGAAACCTCTCACCCAAGGTTGATGAAAATTTTCTGCTCCGTACTTTTGGAAGATTTGGACCTATTGCCAGTGTGAAGATAATGTGGCCTAGGACAGAAGAGGAGCGAAGACGACAAAGAAACTGTGGCTTTGTGGCTTTCATGAACAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGGTGGGGAAAGTCTGTTGCGCTCCCATCGCAAGCCCTACCTGCACCCCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTTATCCTATCTGGTCCATCAGGCGGTCCACCTGTGACTTCTGTGCCTAATCAGAACTCTGAACTGGTCCTTACTCCTAATATTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTGAGGCATGTAATTGATACAATGGCTTTATATGTTCTGGATGGAGGGTGTGCTTTTGAACAAGCTATCATGGAGAGGGGTCGTGGAAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACACACCTACTATGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACTCTTCAAAGATGGCGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATACCCCCCTCATTACCAACAGCAAAAAGTCCAGAACATGAGAAGGAGTCTGGTCCAACACATGCAGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGACGAGTTTGAGGATATGCTGCGGGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCCATGGGGTTTTCTTTGGATAATGCCGATGCAGCTGGCGAGATTGTTGAAGTTTTAACAGAATCATTGACGCTTAAAGAAACCCCCATTCCAACTAAAATTGCAAGGCTCATGCTTGTATCTGATATTCTTCACAATAGTAGTGCTCCTGTAAGAAACGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCTGACGTAATGGAGAGTTTTAATGACTTATATCGTAGCATAATGGGGCGCATTACTGCTGAAGCACTGAAAGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGATTGGTTCCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTTCTTCGACCTGGGAACTCCGGTGTTATACCATTCCATTCCATATGTGGTGATGCTCCTGAGATCGAACAGAAGGCCACTTCTGAAGATACGGTTGGCGGCAAGGCCAACCAAGATGCTGCATTGGCAATGGGCCGAGGAGCTGCAACAAGGGAGCTAATGAGTTTGCCTCTTGCCGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGCAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGGGGTTATGAACTGGATGACGAATTGAAATATGCTCAAAACCAAGCAAATGCAGGGAAGTATACAAGTACTCGGCGGGAAACGAGTGCTGAGCCTGAACCAGCGGGATTATCTGGATGGAACCACTATTCAGATGAAGATTTGCCTTCACAAGGCAAAGGGTCTTCACCTTTAGCATCAACCCTTTCTATTCCACAGCCTGAACTTAAAGCCTTTACAAAAAAGGAGAAGAATGATCCAGTTTTGCCTGCCTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGACGAGCATAGGAGGGATGGAAAGAATCTTGGGCTAAGCTACTCGTCTTCTGGTAGCGAGAATGTTGGAGACGGTCTTAGTAAAGCTGATGAACACGAGTCTGCTGCAGATACAAGTTTTTCAGCTCACACTGACAGTGGAATGAATGAAGAGCAGAGGTTGCAAAAGTTACGACGCTTGGAGGTTGCTCTAATTGAATATCGGGAGTCTCTTGAAGAGAGGGGAATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTGAAGCACACCGGAAACGGCTGCAATCAGAGTATGGTTTATCAGATTCTGGCGAAGATGGTCAAGGCAATATGATAGAGGAAGGGACCGGCACCGCGAAAAGAGTGGAAGCCGAGAGAGGGATGATCATGACAGGGAAAGGAGCAGGGACAGAGATAGGGACCGGGACCGGAGAAGACGGGCCAAATAAGAACATTTCAGGTTCTCTATTAGCAGAGATCTGTCGCCTGAAGTTGGCTTTTGCCATCATAGGGAGATTTTGGCAAATGTGA 3396 0.4535 MLLDYEVEEVSHGDLQSNKETHVDTSNQTPVDKSTTNPIQNLSTANTIPSTATLIPNHPAADPLTTNPTNEKPNPMDEPGNPKPNYIPNPKSSRKSNPAPIAKGKSTNKDKGPLHVDLTVNKSESSDGSSEDTSYVPVQEASSSNDEELVARVSKPIRKEVKKCSITHSFKCVADFAEASSLANVRMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKAFVRGGTINPNDKLKDDTEGEKSKDGVSGPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKDKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRGEHSTSSRFDELPDDFDPSGRLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGGPPVTSVPNQNSELVLTPNIPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKESGPTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDVMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKATSEDTVGGKANQDAALAMGRGAATRELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQANAGKYTSTRRETSAEPEPAGLSGWNHYSDEDLPSQGKGSSPLASTLSIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEHRRDGKNLGLSYSSSGSENVGDGLSKADEHESAADTSFSAHTDSGMNEEQRLQKLRRLEVALIEYRESLEERGIKNLEEIEKKVEAHRKRLQSEYGLSDSGEDGQGNMIEEGTGTAKRVEAERGMIMTGKGAGTEIGTGTGEDGPNKNISGSLLAEICRLKLAFAIIGRFWQM 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00748 1131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 445 IPR000504 GO:0003723
Adu01g00748 1131 MobiDBLite consensus disorder prediction 596 630 - -
Adu01g00748 1131 SMART cwf21_2 1005 1054 IPR013170 -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 87 103 - -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 931 965 - -
Adu01g00748 1131 Coils Coil 1028 1052 - -
Adu01g00748 1131 SUPERFAMILY RNA-binding domain, RBD 364 459 IPR035979 GO:0003676
Adu01g00748 1131 MobiDBLite consensus disorder prediction 247 266 - -
Adu01g00748 1131 Gene3D Surp module 507 576 IPR035967 GO:0003723|GO:0006396
Adu01g00748 1131 Coils Coil 634 654 - -
Adu01g00748 1131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 452 IPR000504 GO:0003723
Adu01g00748 1131 ProSiteProfiles SURP motif repeat profile. 521 564 IPR000061 GO:0003723|GO:0006396
Adu01g00748 1131 MobiDBLite consensus disorder prediction 20 74 - -
Adu01g00748 1131 SUPERFAMILY Surp module (SWAP domain) 495 576 IPR035967 GO:0003723|GO:0006396
Adu01g00748 1131 PANTHER - 180 1057 - -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 285 354 - -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 905 928 - -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 197 221 - -
Adu01g00748 1131 SUPERFAMILY ENTH/VHS domain 633 770 IPR008942 -
Adu01g00748 1131 SMART rrm1_1 372 448 IPR000504 GO:0003723
Adu01g00748 1131 Gene3D - 282 454 IPR012677 -
Adu01g00748 1131 SMART surpneu2 519 573 IPR000061 GO:0003723|GO:0006396
Adu01g00748 1131 Gene3D - 629 775 IPR008942 -
Adu01g00748 1131 PANTHER RNA PROCESSING PROTEIN LD23810P 180 1057 - -
Adu01g00748 1131 SMART 558neu5 636 771 IPR006569 -
Adu01g00748 1131 Coils Coil 203 223 - -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 119 147 - -
Adu01g00748 1131 Pfam cwf21 domain 1005 1052 IPR013170 -
Adu01g00748 1131 ProSiteProfiles CID domain profile. 629 774 IPR006569 -
Adu01g00748 1131 ProSiteProfiles SAP motif profile. 822 856 IPR003034 -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 1 147 - -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 1 19 - -
Adu01g00748 1131 Gene3D - 1004 1056 - -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 877 1008 - -
Adu01g00748 1131 Pfam CID domain 636 764 IPR006569 -
Adu01g00748 1131 CDD RRM_SR140 370 453 IPR035009 -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 603 630 - -
Adu01g00748 1131 MobiDBLite consensus disorder prediction 196 372 - -
Adu01g00748 1131 Pfam Surp module 519 571 IPR000061 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00748 354 448 Eukaryotic Initiation Factors Gene Family AT1G22760 31.579 2.63e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00748 K12842 - gmx:100776093 1567.75