Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00639 ATGGGAAGAGGGAAGATCGAGATCAAGCGAATCGAGAACACGACGAATCGGCAGGTAACGTTCTGTAAGAGGCGGAACGGATTGCTGAAGAAAGCTTATGAACTGTCTGTCCTTTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCAGCCGTGGCCGTTTGTATGAATATGCTAACAACAGTGTTAGGGCAACAATTGAAAGGTATAAAAAAGCATATTCTACTTCCACAAGCGCAGAATCTGTGTCTGAAGCTAACACGCAGTATTACCAGCAAGAATCAACCAAAATGAAAAGACAAATCCGAGAGATTCAAAATCTAAACAGGCACATCCTTGGTGAAGCACTCAGCACTCTAAGCCTTAAGGAACTAAAGAACCTTGAAAGCAGATTGGAGAAAGGCTTAAGCAGAGTCAGATCCAGAAAGCATGAAACATTGTTAGCTGAAGTTGAATTCATGCAAAAACGGGAAATTGAGCTGCAAAACCACAACAATTTTCTGAGAGCAAAGGAACTATATGTGACACAATTGCATCTTCACAACAACCACCACCACCATTTGATCGCAACTTCTTTTAGGATCTGCTCACCAATATTGTTGTCTGATAGAGGGTGGTGGAAACCAATGGAAGTTCAAGAACAGCCTTCACATAATTTAATCTATCTGAAATATATATAG 678 0.41 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKAYSTSTSAESVSEANTQYYQQESTKMKRQIREIQNLNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKHETLLAEVEFMQKREIELQNHNNFLRAKELYVTQLHLHNNHHHHLIATSFRICSPILLSDRGWWKPMEVQEQPSHNLIYLKYI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00639 225 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Adu01g00639 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu01g00639 225 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Adu01g00639 225 PANTHER MADS BOX PROTEIN 1 179 - -
Adu01g00639 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu01g00639 225 ProSiteProfiles K-box domain profile. 87 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu01g00639 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 179 - -
Adu01g00639 225 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu01g00639 225 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Adu01g00639 225 Coils Coil 90 110 - -
Adu01g00639 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu01g00639 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu01g00639 225 Coils Coil 121 141 - -
Adu01g00639 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu01g00639 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu01g00639 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00639 Adu-Chr1 8705515 8714199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00639 1 170 MADS-box Gene Family AT2G42830 79.070 9.13e-98 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu01g00639 K-box 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00639 K09264 - gmx:100782733 303.138