LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu01g00607	ATGTTGCAACTTAAGGTAGTGGCCATAACCCTAATATGGTGGTGGTGGACATGGCATCTTCACGGTGCAGTTGTTGTTGCAGATCCTCAAGTGAATCTAATAAACCAAGGGTGCAGTTCATACAACGAAACCAACTTGAGAAGCTTCTTTGCCAACATCAATGGAACGTTTTCGGAGCTAAGAAGTGATATAGTGAATCAAAGCAAGCACTTTGGAACTGCACAAGAAGCGAGGGGAGAGGTTATCACATACACAATGTTTCAGTGCAGAAACTATCTTTCTCAAAGGGATTGTCTTAGTTGCTTCAACAACGCTACCATTCAAATTCGGAATTGTTCAAATGGGAATGGTGCCAGAGTCATCTATGATGGTTGCTTCCTCAGGTATGAGAGCAATATCTTCTTCAGCCAAACAACTGAACCTGGGAATGGTGTAAAATGTGGGAACAAAACAGGAAAAGGAGGCAATGATTTTGTTTCAGCTGGAAAACAAGCTCTAATGAATCTCCAAACAGCAACACCAAAAATCAAAGGATTCTATGCTGCCACAAAGACACAATTGGCTAATAATAATGGTGGTGCAATCTATGCTGTTGCACAGTGTGTTGAAACTGCCACTCAAAGTGATTGTTTGGCATGCATGAATGTTGGATACAACAATTTGCAAACATGTCTTCCTAATTCTGATGGTAGGGCTTATGATGCTGGTTGTTTTATGAGATATTCACAGACTCCCTTTTTTGCTGATAATCAAACCATTGATATCACTCCATACTTGGCACAAGGAGGTTCAAGCAAGAAGTGGGCCATTATAGGTGGTGTTGGTGGAGGTGTAGTTCTTGTTGTGATCCTTCTTGCATTATTTGCATGGTATAGACATTCAAAAAAACCCAAAAGGGTTCCTAGAGGGGATATATTGGGAGCAACCGAGTTGAAAGGTCCAGTTAATTACAAGTATAATGATTTGAAAGCTGCAACAAAAAATTTCAGTGAAGAAAATAAATTAGGAGAAGGGGGTTTTGGTAATGTGTACAAGGGTACTCTTAAAAATGGGAAAGTTGTGGCAGTGAAGAAATTGATTTTGGGGCAAACTGACAAAATGGAAGATCATTTTGAGAGTGAAGTAAAGCTGATTAGTAATGTGCACCATAGGAATCTGGTGAGGCTTCTTGGTTGTTGTAGCAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAGTAGCCTTGATAGATTCTTATTTGGTAACAAGAAAGGCTCCCTGAATTGGAGACAACGTTGTGACATAATTTTAGGGACAGCAAGGGGATTGGCCTATCTTCATGAGGAATTCCATGTTTCTATTATTCACAGAGATATAAAGAGTGGAAATATTCTATTGGATGATGATCTTCAACCTAAAATTGCTGATTTTGGTTTGGCTAGACTTCTTCCTGGGGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTAGGATATACAGCACCTGAATATGCAATTCATGGCCAATTATCAGAAAAAGCAGACACTTATAGTTATGGCATTGTAGTTCTAGAAATTATAAGTGGTCAAAAGAGTACCGAAATGAAGGTTGACGATAATGGACATGAATATCTTCTTCAACGAGCATGGAAACTGCACGAGGAAGGAATGCACGTAGAGTTAGTGGACAAAAGCATAGAAGCTAATGAATATGAAACAGGCGAAGTGAAGAAAATAATGGAAATTGCATTGATGTGCACTCAAGCATCAGCATCAATGAGGCCAACAATGTCTGAAGTAGTTGTGTTACTAAAAAGCAAAGGCTTATTTGAGAATATGCAACCTTCAATGCCTGTGTTTGTTGAGTCAAATATGAAAGCCAGAGGAGATATTTCTGCTTCAACCGCTGGTTCCTCTACAACTACTTCCAATGCTACTGTCTCCACTTCTATAGTATCAGCAAGATGA	1959	0.3931	MLQLKVVAITLIWWWWTWHLHGAVVVADPQVNLINQGCSSYNETNLRSFFANINGTFSELRSDIVNQSKHFGTAQEARGEVITYTMFQCRNYLSQRDCLSCFNNATIQIRNCSNGNGARVIYDGCFLRYESNIFFSQTTEPGNGVKCGNKTGKGGNDFVSAGKQALMNLQTATPKIKGFYAATKTQLANNNGGAIYAVAQCVETATQSDCLACMNVGYNNLQTCLPNSDGRAYDAGCFMRYSQTPFFADNQTIDITPYLAQGGSSKKWAIIGGVGGGVVLVVILLALFAWYRHSKKPKRVPRGDILGATELKGPVNYKYNDLKAATKNFSEENKLGEGGFGNVYKGTLKNGKVVAVKKLILGQTDKMEDHFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGNKKGSLNWRQRCDIILGTARGLAYLHEEFHVSIIHRDIKSGNILLDDDLQPKIADFGLARLLPGDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTEMKVDDNGHEYLLQRAWKLHEEGMHVELVDKSIEANEYETGEVKKIMEIALMCTQASASMRPTMSEVVVLLKSKGLFENMQPSMPVFVESNMKARGDISASTAGSSTTTSNATVSTSIVSAR	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu01g00607	652	MobiDBLite	consensus disorder prediction	628	652	-	-
	Adu01g00607	652	CDD	STKc_IRAK	335	602	-	-
	Adu01g00607	652	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	450	462	IPR008271	GO:0004672\|GO:0006468
	Adu01g00607	652	Pfam	Salt stress response/antifungal	153	243	IPR002902	-
	Adu01g00607	652	Pfam	Salt stress response/antifungal	38	131	IPR002902	-
	Adu01g00607	652	Pfam	Protein kinase domain	330	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu01g00607	652	SUPERFAMILY	Protein kinase-like (PK-like)	317	627	IPR011009	-
	Adu01g00607	652	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	23	647	-	-
	Adu01g00607	652	ProSiteProfiles	Gnk2-homologous domain profile.	31	134	IPR002902	-
	Adu01g00607	652	ProSiteProfiles	Gnk2-homologous domain profile.	140	246	IPR002902	-
	Adu01g00607	652	Gene3D	Phosphorylase Kinase; domain 1	301	405	-	-
	Adu01g00607	652	Gene3D	-	144	246	IPR038408	-
	Adu01g00607	652	Gene3D	-	30	134	IPR038408	-
	Adu01g00607	652	ProSiteProfiles	Protein kinase domain profile.	329	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu01g00607	652	SMART	serkin_6	329	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu01g00607	652	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	23	647	-	-
	Adu01g00607	652	ProSitePatterns	Protein kinases ATP-binding region signature.	335	358	IPR017441	GO:0005524
	Adu01g00607	652	Gene3D	Transferase(Phosphotransferase) domain 1	406	612	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu01g00607	Adu-Chr1	8301347	8307534	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu01g00607	25	652	Receptor kinase-like Gene Family	AT1G70520	36.646	4.41e-128	390

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Adu01g00607		Pkinase	1.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu01g00607	-		-	ahf:112794879	971.844