Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00568 ATGGGGAGAAGACCAGCGAGGTGTTACAGGCAAATCAAGAACAAGCCATATCCAAAATCGCGATTCTGCAGGGGTGTGCCTGACCCTAAGATCCGAATCTATGACGTCGGAATGAAGAAGAAGGGTGCGGATGAGTTTCCGTTCTGCGTGCACCTTGTTTCATGGGAGAAGGAGAATGTTTCCAGTGAGGCACTTGAGGCTGCTCGCATTGCTTGCAACAAGTACATGTCCAAATTCGCAGGCAAAGACGCTTTCCATTTGCGTGTTAGGGTTCATCCTTTCCATGTTCTCCGTATCAACAAGATGCTCTCCTGCGCCGGCGCCGACAGGCTCCAGACTGGCATGAGGGGCGCCTTTGGCAAGCCGCAGGGCACTTGCGCTAGGGTCAACATTGGCCAGGTGCTTCTCTCGGTTCGCACCAAGGATAACCATGGTCATCATGCTCAGGAGGCTCTGCGACGCGCCAAGTTCAAGGGATTTACAAAGTTCAACCGAACAGAGTATTTGAAGTTAAAGTCTGAGAACAGAATTGTGCCTGATGGTGTCAATGCCAAGggacggattcaaatccaggagaccgttcctgggttgcctaaactacaatactgtgggtaa 615 0.465 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGADEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRTKDNHGHHAQEALRRAKFKGFTKFNRTEYLKLKSENRIVPDGVNAKGRIQIQETVPGLPKLQYCG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00568 204 SUPERFAMILY Ribosomal protein L16p/L10e 4 158 IPR036920 GO:0003735|GO:0005840|GO:0006412
Adu01g00568 204 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Adu01g00568 204 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 185 - -
Adu01g00568 204 Gene3D Ribosomal protein L10e/L16 1 199 IPR036920 GO:0003735|GO:0005840|GO:0006412
Adu01g00568 204 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 158 IPR001197 GO:0003735|GO:0005840|GO:0006412
Adu01g00568 204 CDD Ribosomal_L16_L10e 41 163 IPR016180 GO:0003735|GO:0005840|GO:0006412
Adu01g00568 204 PANTHER 60S RIBOSOMAL PROTEIN L10 1 185 IPR001197 GO:0003735|GO:0005840|GO:0006412
Adu01g00568 204 Pfam Ribosomal protein L16p/L10e 12 158 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00568 Adu-Chr1 7829699 7832773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00568 1 185 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 84.343 1.67e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00568 K02866 - pda:103702162 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00568 01 7829699 7832773 Adu01g00568 01 7829699 7832773 ECH