Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00560 ATGTCCGCACACTCCACCCTGAAGCTTCAGAATCTCGCAATAAGAAGCTCAAGCTTCGATTTTGAAGGCGACCCACCATGCAAAACAGCAAAAAGGCTTCGATCGAAGAAGCTCCTTCGAATCATACTCACCGATCCCGACGCCACCGATTCAGAATCTTCCAACGATGAAGCAGAGGAGCAAACCCCATCACCGAGGGTAAAAAGGGAAATTATCACTCACATAATGACCCCTCGGCTTCACTCTTCGCATTCTTCTTCTCCAACCGCATCTTCATCACCTTCTCCTTCAATCGGTTCGGGTCAAAACCATGTTGACCGGAACCGGTTCAAGAGGAAAATAAAACGCACCATTTCTGGCTCTGGAAGGTTCCGTGGCGTTCGTCAGAGACCGTGGGGGCGGTGGACGGCAGAGATTCGTGACCCGAACCGAAGAAAACGGGTTTGGTTGGGCACTTTTGACACGGCGGAGGAGGCTGCCGCTGTTTACGACGCCGCGGCAGTTAAGTTCAAGGGTCCCGGCGCAGCTATTAACTTTCCTCGTGGCGATTCGGAAGTTTCCGGCGAGAGTTTTGCGGTGGTTTCCGGTGAGGGTTTTGTGGCGGTTTCTGGGAGCAGAGGGGGTTTTGCCTCTCCGACTTCGGTCCTTGCTTACGATGACGGCGTTGTTGGTGGTTGCGAGACGACGCCGTTTGAGGGTCTCCGTTACGGCGATGTGGATGCTTTCGGTTTTGACATTGACGTGCCGTTAAGTTTGATGGGCGTTAACTCGGTATTGACTCAGCGGTTTGGGAAGGAAGAGTTCGGCGAGTTAGACCCGGAAGATTTCCTGACGTGGCCTGAATAG 846 0.5307 MSAHSTLKLQNLAIRSSSFDFEGDPPCKTAKRLRSKKLLRIILTDPDATDSESSNDEAEEQTPSPRVKREIITHIMTPRLHSSHSSSPTASSSPSPSIGSGQNHVDRNRFKRKIKRTISGSGRFRGVRQRPWGRWTAEIRDPNRRKRVWLGTFDTAEEAAAVYDAAAVKFKGPGAAINFPRGDSEVSGESFAVVSGEGFVAVSGSRGGFASPTSVLAYDDGVVGGCETTPFEGLRYGDVDAFGFDIDVPLSLMGVNSVLTQRFGKEEFGELDPEDFLTWPE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00560 281 PIRSF PTI6 7 281 IPR017392 GO:0003700
Adu01g00560 281 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Adu01g00560 281 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Adu01g00560 281 MobiDBLite consensus disorder prediction 59 75 - -
Adu01g00560 281 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Adu01g00560 281 MobiDBLite consensus disorder prediction 44 112 - -
Adu01g00560 281 CDD AP2 123 180 IPR001471 GO:0003700|GO:0006355
Adu01g00560 281 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Adu01g00560 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 33 220 - -
Adu01g00560 281 MobiDBLite consensus disorder prediction 78 104 - -
Adu01g00560 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 220 - -
Adu01g00560 281 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Adu01g00560 281 SUPERFAMILY DNA-binding domain 123 180 IPR016177 GO:0003677
Adu01g00560 281 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00560 Adu-Chr1 7713913 7715565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00560 35 222 AP2-EREBP Transcription Factor Family AT4G27950 44.500 7.11e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu01g00560 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00560 K13434 - gmx:102660028 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00560 01 7713913 7715565 Adu01g00560 01 7713913 7715565 ECH
Adu01g00560 01 7713913 7715565 Adu07g01145 07 16817784 16819497 PCT