Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00557 ATGTCGTATGTGCCTCCACACCTCAGAAACTCAACCACCACAACAACAACCACTACCACCACCACCACCACGGCGAAAACCTCCTCCGTAACCCAAGAAAACAACAACGACAATATCAGCAACAATGTTAACCATCAAACTAAGCTCGCATTCCCTTCTTATTCAAACTCACACTCTCACTTTCACTCCAACGGCACCAATGGAACCAATGGAATCAATGGCAACGCCAACAACCACAATTCCGTGTCCCATGGTTCTCGCCGCTCCACCGCCACTCCGCAGCCGTCACGGATTTTCGCAGCTCCCGAGCCAGTTTTCCCTCACTGGCAGCCATCCGAGCGCGTTTCACGCATGAGCCCCGACCAGATTGAAGAGGTCCGCCTCCGACTTAACCTTGATGTCACTATTGCATCAGACTCTCCAGCTGCTCCTGCACCAATTGAATCATTTAGTGATATGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTACTTGGCTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACAATTCCTATGATACAGCATTGCATGGCTCAACCTCCTATTCGGCGTGGTGATGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTAAGAGCAGGAGTTGAAATTGCTGTTGCAACCCCTGGAAGATTTATTGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAAGCAGATAGAATGCTTGATATGGGTTTTGAGCTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTATCAAAGGAATACTTGGCTAATCCTGTACAAGTGAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCACAAACACTTGTGAAGGTCTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTAACAATAGTGTTTGTTGAAAGAAAGACGAGATGTGACGAAATTGCTGAAGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAGGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCGACTTCATTCTACACTGATCGTGACATGTTCCTCGTTGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACACTTTGGATTGGGACCTGCTTCAATTAACATCGAAGATAAATATAGATTTATGATTACTACCTCAAACATTAAAAAGATCCTCAAAGGTGTTCTGGTTCTTATACTTGGACTGAGTAGATCTGCAGAGTTGTTGCTTCTATGA 1830 0.4454 MSYVPPHLRNSTTTTTTTTTTTTTAKTSSVTQENNNDNISNNVNHQTKLAFPSYSNSHSHFHSNGTNGTNGINGNANNHNSVSHGSRRSTATPQPSRIFAAPEPVFPHWQPSERVSRMSPDQIEEVRLRLNLDVTIASDSPAAPAPIESFSDMVLSLSLSLSLSLKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCMAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFELQIREIMRNLPEKHQTLLFSATMPVEIEALSKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQGEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKHFGLGPASINIEDKYRFMITTSNIKKILKGVLVLILGLSRSAELLLL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00557 609 SMART helicmild6 420 501 IPR001650 -
Adu01g00557 609 Coils Coil 239 259 - -
Adu01g00557 609 CDD DEADc 173 361 - -
Adu01g00557 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 360 IPR014001 -
Adu01g00557 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 521 IPR027417 -
Adu01g00557 609 Gene3D - 366 560 IPR027417 -
Adu01g00557 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 82 563 - -
Adu01g00557 609 Pfam Helicase conserved C-terminal domain 384 501 IPR001650 -
Adu01g00557 609 SMART ultradead3 172 375 IPR014001 -
Adu01g00557 609 Coils Coil 542 562 - -
Adu01g00557 609 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 306 314 IPR000629 -
Adu01g00557 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 384 542 IPR001650 -
Adu01g00557 609 Pfam DEAD/DEAH box helicase 177 347 IPR011545 GO:0003676|GO:0005524
Adu01g00557 609 Gene3D - 108 364 IPR027417 -
Adu01g00557 609 CDD SF2_C_DEAD 372 510 - -
Adu01g00557 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 82 563 - -
Adu01g00557 609 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00557 Adu-Chr1 7652539 7660035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00557 148 523 Eukaryotic Initiation Factors Gene Family AT1G72730 34.737 1.74e-64 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00557 K12823 - gmx:100787545 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00557 01 7652539 7660035 Adu01g00557 01 7652539 7660035 ECH