Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00529 ATGCCACAGCAAGAGTTTTCAATGGCTCTAATGATTCTTCTCATTGTTCTCTCCATTGACATGATTATCATGCAAGGTGCCACAGCTGACTATGGTGGTTGGGAGAGTGCTCATGCCACTTTCTATGGTGGTGGTGATGCCTCTGGCACAATGGGATATGGGAATTTGTATAGCCAAGGTTATGGAACGAACACAGCAGCATTAAGCACTGCTTTGTTCAACAATGGACTAAGCTGTGGATCATGCTATGAGATGAAGTGTAATGATGACCCAAGATGGTGCAAGCCGGGTTCGATCATTGTCACGGCCACCAACTTCTGCCCGCCGAACCCGGCTCTGCCCAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAGCACTTTGACATGGCTGAGCCAGCATTCTTGCAAATTGCTGAATATAGGGCTGGAATTGTGCCTGTTGCTTTTAGAAGAGTTCCTTGCATGAAGAAGGGAGGAATAAGATTCACCATCAATGGCCACTCTTACTTCAACCTAGTTTTGGTAACAAACGTTGGAGGTGCTGGTGATGTTCATTCAGTTTCCATCAAAGGATCAAGAACTGGGTGGCAATCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACCTCAATGGTCAAACCCTCTCATTCCAAGTCACCGCCAGTGACGGTAGAACTGTCACAAGCTTCAACGTGGCACCATCTAATTGGCAGTTTGGTCAAACCTTCCAAGGAAGCCAATTCTAG 759 0.4664 MPQQEFSMALMILLIVLSIDMIIMQGATADYGGWESAHATFYGGGDASGTMGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCNDDPRWCKPGSIIVTATNFCPPNPALPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQSMSRNWGQNWQSNSYLNGQTLSFQVTASDGRTVTSFNVAPSNWQFGQTFQGSQF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00529 252 Gene3D - 160 252 IPR036749 -
Adu01g00529 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Adu01g00529 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Adu01g00529 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Adu01g00529 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Adu01g00529 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Adu01g00529 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Adu01g00529 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Adu01g00529 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Adu01g00529 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Adu01g00529 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Adu01g00529 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Adu01g00529 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Adu01g00529 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Adu01g00529 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Adu01g00529 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Adu01g00529 252 SUPERFAMILY Barwin-like endoglucanases 33 178 IPR036908 -
Adu01g00529 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Adu01g00529 252 PANTHER EXPANSIN 5 252 - -
Adu01g00529 252 SMART dpbb_1 65 150 IPR007112 -
Adu01g00529 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Adu01g00529 252 Gene3D - 21 156 IPR036908 -
Adu01g00529 252 PANTHER EXPANSIN-A15 5 252 IPR002963 GO:0009664
Adu01g00529 252 Pfam Lytic transglycolase 65 149 IPR009009 -
Adu01g00529 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00529 Adu-Chr1 7224263 7227084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00529 6 252 Expansin Gene Family AT2G40610 76.190 1.56e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00529 - - gmx:100499976 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00529 01 7224263 7227084 Adu01g00529 01 7224263 7227084 ECH
Adu01g00529 01 7224263 7227084 Adu02g02457 02 90329388 90334933 ECH
Adu01g00529 01 7224263 7227084 Adu07g01174 07 17517438 17519537 ECH
Adu01g00529 01 7224263 7227084 Adu07g01174 07 17517438 17519537 PCT