Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00419 ATGGAATCCAAGATTAATAATAAGACTTGTCAAGAAGGGTTGCACCACAGAATCTCTGCATTGCTTGAATTTTCAGCCTCAGATGATGTAACAGCGTTCAAGGAAGCTATTGAGAAAGAGGGCCATAACGTTGGTGAGATTGGATTATGGTATGGTAGGAGAATTGGAACAAAGGAAGTTGGATATGAAGAGAGAACCCCTCTTATGATTGCTGCAACGTTTGGCAGCAAGAATGTCTTGTCTTACATTCTCAAAACAGGCAAAGCTGATGTCAACAAATCTTGCGGCTCGGATTCAGCCACGGCGCTCCACTGCGCCGTGGACGGAGCCTCCCCAGCCTCCGCCCAAATTATTAAGTTGTTGCTTGATTCTTCAGCGAATCCTAACGCCGTGGATGCCAGAGGCAACCGGTGCTATGACTTGGCTGTCTCCATGCCCTCCATCTACAATACAAGAAAGAAGGCCGTACAATCGGTTCTAGAAGGGGCGAACAATGTATACAAGAAGGAGGCAACATCGATTGGAATATCATCAAGCTTGAACGAGAGAGGCAAGGTAACTGCTGGTACGGCAGAGTTTCCGGTGTCTCCTCGGTATAAAGAGTTTCCGGTGGACCACTCGCTACCGGACATAAAGAACGGTATATATAGCACGGACGAGTTTAGAATGTATACCTTCAAAGTGAAACCATGTTCGAGGGCGTATTCACACGATTGGACAGAGTGTCCTTTCGCGCATCCTGGCGAGAATGCCAAGAGGCGCGACCCGAGGAAATACCAGTACAGCTGCGTTCCCTGTCCGGAGTTCCGGAAAGGGAGCTGCAGCAAAGGAGATTCCTGCGAATACGCGCATGGAATCTTCGAGTGCTGGCTTCACCCGGCTCAATACAGAACAAGGCTGTGCAAGGACGAGATGGCATGTACTAGAAGAGTGTGTTTCTTCGCGCACAAGCCAGAAGAATTACGTCCTCTGTATGCTTGTTCTGGCTCTGCATTGCCTTCTCCCACGTCTTATTCGCCAGGTGGCGCTAATTCATTGGACCTTTGTTCATCCTTATCGTCACCAGATGGTGGTGGATCTGGATCTTCCCCGGTGTGGCAAACTCCTCAAGCTAAGCTTCCCAAAAGCAGGCTAAACCTAGCCCTCAGCGCTAGAGATGTTAATCTTGACATCCAGTCGATCGGCCTTGAAAGCCGGCGACTGATGCAAAAGCTTATGATGGAAGAGATGGTTTCATCAGCATTATCTCCCAATTCTTCCACCTGGAGAAACTCGTTGCCTACGAGTCCGTCTTTCGGTTCTCCGGTTCCCTCTCCGACTAATATTTGGGGAAGTGCTTCCAGCTATTCTCCTTCACCTTCAAAAGTCATTGGATCGCCGGCGGCATACGGCCTGGATCTTTCCGGTGGTGGCGTCTCTTTGCGGAGTCCGAGCGAGATTCCTTCTCCTTCGAAAAACTCCATAGGCATGGAATCGTCGCCGTCTACCTTGTTTGGTTGGGGTTCCCCTGATGGAAAATTAGATTGGTCCATTCGCAGAGATGAGTTGAACAAAATGCACAAGTCAAATTCTTTCGCCTTTCGAAGCACTGCTAATCTTGTTACGACTCCGGAGCTGGCGGAGGATGCTATTGATGAACTAGATGTGTCTTGGGTTAGTTCTCTTGTGAAGGATTCTTCCAGCAACAACTACTCCACCATGTTAACACATGAACAGTTTAATGTCATGTAA 1731 0.4858 MESKINNKTCQEGLHHRISALLEFSASDDVTAFKEAIEKEGHNVGEIGLWYGRRIGTKEVGYEERTPLMIAATFGSKNVLSYILKTGKADVNKSCGSDSATALHCAVDGASPASAQIIKLLLDSSANPNAVDARGNRCYDLAVSMPSIYNTRKKAVQSVLEGANNVYKKEATSIGISSSLNERGKVTAGTAEFPVSPRYKEFPVDHSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDPRKYQYSCVPCPEFRKGSCSKGDSCEYAHGIFECWLHPAQYRTRLCKDEMACTRRVCFFAHKPEELRPLYACSGSALPSPTSYSPGGANSLDLCSSLSSPDGGGSGSSPVWQTPQAKLPKSRLNLALSARDVNLDIQSIGLESRRLMQKLMMEEMVSSALSPNSSTWRNSLPTSPSFGSPVPSPTNIWGSASSYSPSPSKVIGSPAAYGLDLSGGGVSLRSPSEIPSPSKNSIGMESSPSTLFGWGSPDGKLDWSIRRDELNKMHKSNSFAFRSTANLVTTPELAEDAIDELDVSWVSSLVKDSSSNNYSTMLTHEQFNVM 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00419 576 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 285 IPR000571 GO:0046872
Adu01g00419 576 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 488 564 - -
Adu01g00419 576 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 9 434 - -
Adu01g00419 576 Gene3D - 13 167 IPR036770 -
Adu01g00419 576 MobiDBLite consensus disorder prediction 350 369 - -
Adu01g00419 576 SUPERFAMILY Ankyrin repeat 22 145 IPR036770 -
Adu01g00419 576 PANTHER UNKEMPT FAMILY MEMBER 488 564 IPR045234 -
Adu01g00419 576 PANTHER UNKEMPT FAMILY MEMBER 9 434 IPR045234 -
Adu01g00419 576 Gene3D - 261 323 - -
Adu01g00419 576 MobiDBLite consensus disorder prediction 475 495 - -
Adu01g00419 576 SMART c3hfinal6 295 318 IPR000571 GO:0046872
Adu01g00419 576 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Adu01g00419 576 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Adu01g00419 576 ProSiteProfiles Ankyrin repeat profile. 98 133 IPR002110 GO:0005515
Adu01g00419 576 Pfam Ankyrin repeats (3 copies) 56 132 IPR002110 GO:0005515
Adu01g00419 576 SMART ANK_2a 98 130 IPR002110 GO:0005515
Adu01g00419 576 SMART ANK_2a 63 93 IPR002110 GO:0005515
Adu01g00419 576 MobiDBLite consensus disorder prediction 416 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00419 Adu-Chr1 5555400 5557130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00419 16 412 C2H2 Transcription Factor Family AT5G12850 44.719 1.94e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu01g00419 Ank_2 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00419 - - aip:107616248 1104.74