Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00397 ATGTGTCGGTTAGGGCTTCCTTTAACAGCCATAGATAGGTTCTTATGTAGCCAACAACAAAGTCAAGTCCTTCACAATGATGATAGTGTTTTTGATGAAGATTTTCTTCAAACTAGGTTTTCTAATTGTTATTATGGTGGTGGTTCAAATAACCCTTATTATAAGCTTGTGTGGCCTAATTGCACTACTCAAGAAGCAAGCATTGTTGTTCATCATGATAATAATCAACAAGAGGGTTTCAATAATTGGCTACAACAAATTCCCACATTGTGTCACAATCAAGAAGATGTTCATCAAGCTTTAGGGAAAACTAATGTCAAAGTTGTGGGAAGAAACCCTAAAAAAGCTTCTTCTTCTTCTTCTGTTTCCTTGATCAAAGGACAATGGACTCCTGAAGAAGACAGGAAATTGGAGAAGCTGGTGAAACAACATGGAACAAGGAAGTGGTCACAAATAGCTGAAAAATTGGAGGGAAGGGCTGGGAAGCAATGTAGAGAGAGGTGGCATAATCATCTCCGACCAGATATTAAGAAAGACGGTTGGAGTGAAGAAGAAGAGAGGATATTGGTGGAAACTCATGCCAAGGTTGGAAATCGTTGGGCAGAAATCGCGAAGCATATACCAGGGCGAACTGAAAACTCAATCAAGAACCATTGGAACGCAACAAAGAGAAGGCAGAACTCAAGGAGAAAGAACAGGAAGCCATCATCATCAACCAACTCAAACAATAATGGCAAACCACAATCTTCAATTCTCCAAGACTACATTAGAAGCCAAACCCTAATTGGTACCAATAATATCAATGCTCCTATTACCACTACTAACTCAACCCCAACTATTACTAGTGAATCTGAATGTGATAATAATAATCCATATTATTCATCACCAACAATCATAGCTGAATCATATGATGATGAGTTACTCTTCATGCAACAACTTTTCAAAGAGAATAATCAAATTGTCAATGGAGATGGTGTTGGTAAGAACCCTAGTGATGAATGTGGTGATGGGTTTGTTCATTATTCCAATAATTATTATTATCTTTCAAATCCATGGAACATGCACAACCCTACCACCAATAATAATAATAATGGTTACCTTGATTCTGATCTCTATATCTCTCAATTGATGAACAATGGAGTTTCAACAACAAGTTCATCATCATCACTTCATGAGGCTTATGAGAAGAATCAAAACATGGATTTTCATTGTTCAGCTGTGAAGAAAAGTGAGATGGATCTGTTAGAGTTTGTTTCCACTCATCATCAATTTTAA 1275 0.371 MCRLGLPLTAIDRFLCSQQQSQVLHNDDSVFDEDFLQTRFSNCYYGGGSNNPYYKLVWPNCTTQEASIVVHHDNNQQEGFNNWLQQIPTLCHNQEDVHQALGKTNVKVVGRNPKKASSSSSVSLIKGQWTPEEDRKLEKLVKQHGTRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVETHAKVGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNRKPSSSTNSNNNGKPQSSILQDYIRSQTLIGTNNINAPITTTNSTPTITSESECDNNNPYYSSPTIIAESYDDELLFMQQLFKENNQIVNGDGVGKNPSDECGDGFVHYSNNYYYLSNPWNMHNPTTNNNNNGYLDSDLYISQLMNNGVSTTSSSSSLHEAYEKNQNMDFHCSAVKKSEMDLLEFVSTHHQF 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00397 424 MobiDBLite consensus disorder prediction 207 249 - -
Adu01g00397 424 CDD SANT 129 172 IPR001005 -
Adu01g00397 424 SMART sant 177 225 IPR001005 -
Adu01g00397 424 SMART sant 125 174 IPR001005 -
Adu01g00397 424 MobiDBLite consensus disorder prediction 233 249 - -
Adu01g00397 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 227 IPR017930 -
Adu01g00397 424 Pfam Myb-like DNA-binding domain 129 186 - -
Adu01g00397 424 ProSiteProfiles SANT domain profile. 176 227 IPR017884 -
Adu01g00397 424 Gene3D - 179 251 - -
Adu01g00397 424 ProSiteProfiles Myb-like domain profile. 173 223 IPR001005 -
Adu01g00397 424 CDD SANT 181 223 IPR001005 -
Adu01g00397 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 176 IPR017930 -
Adu01g00397 424 PANTHER TRANSCRIPTION FACTOR MYB119-RELATED 111 401 - -
Adu01g00397 424 MobiDBLite consensus disorder prediction 267 288 - -
Adu01g00397 424 Gene3D - 125 177 - -
Adu01g00397 424 ProSiteProfiles Myb-like domain profile. 121 172 IPR001005 -
Adu01g00397 424 PANTHER MYB PROTEIN-RELATED 111 401 - -
Adu01g00397 424 SUPERFAMILY Homeodomain-like 123 219 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00397 Adu-Chr1 5190738 5193195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00397 7 419 MYB Transcription Factor Family AT5G58850 38.964 1.33e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu01g00397 Myb_DNA-bind_6 4.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00397 K09422 - gmx:100786295 294.278