Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00387 ATGAAGTGGGAAGTAGAAGTACTCTCTCCTTCTTCACCTTATGTTCATCATAACAACACAACTCATTGGTTTCTTGGAGATAACAACATCATCAACAACAACAATAATAGGAGCAGCACAAAATGGACCCATGAAGAGAACAAATTGTTTGAGAATGCTCTTGCTTTGCATGATAAGGATACACCAGATAGGTGGCACAGGGTAGCTGAGATGATTCCAGGGAAAACTGTTCTTGATGTGATGAAGCAGTACCATGAATTGTTAGCAGATGTTAGTGATATTGAAAATGGGTTGGTACCAATTCCAGGTTACAGTACCAGCACAACAACAACTACTTCACCTTTTACATTGGATTGGGTCAACAATAGTTGTTCTGGGTATGATGGGTTTAAAGGAATTGGTGCTGCTGCAAAGAGATCTTCAAAAACACCAGAACAAGAGAGGAAGAAAGGTGTGCCTTGGACTGAAGAAGAGCATAAATTGTTCCTACTTGGTCTAAAGAAGTATGGCAAAGGAGATTGGAGGAACATTTCGCGCAACTTCGTGATCACTCGGACGCCAACTCAGGTGGCGAGCCATGCTCAGAAGTACTTCATCCGACAACTCTCCGGCGGCAAAGACAAGAGGAGGGCAAGCATCCATGACATAACAACAGTTAATCTCACAGACAACAACAGAACACTTGCTAATCCTTCCTCAGAAGATAGCAGCAAGAGATCCACTTCACCACAACACCATCATTCCATGGTGTTCTCAAATTCAAATCCTATAGGGAAATTCCAATGGAACAATAATATTAATAATGATAATGATGATACTAAGTCAAATTCAGGAGGAGGAGTATCCACTATGAGATTCAACAATGATGATGAAGCTTTTATGTCTCATCATTATGGTGTTAATTCCTCCTATGGTTTTAAGATGCAGGGTCAGAATATGCATAAAAGTGCTCTTAATGAGTCTTCTTACTTAGCACTTCAGACACAAAACATTGCTTTCCAAATGTAG 1008 0.4028 MKWEVEVLSPSSPYVHHNNTTHWFLGDNNIINNNNNRSSTKWTHEENKLFENALALHDKDTPDRWHRVAEMIPGKTVLDVMKQYHELLADVSDIENGLVPIPGYSTSTTTTTSPFTLDWVNNSCSGYDGFKGIGAAAKRSSKTPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTDNNRTLANPSSEDSSKRSTSPQHHHSMVFSNSNPIGKFQWNNNINNDNDDTKSNSGGGVSTMRFNNDDEAFMSHHYGVNSSYGFKMQGQNMHKSALNESSYLALQTQNIAFQM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00387 335 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Adu01g00387 335 Pfam Myb-like DNA-binding domain 153 198 IPR001005 -
Adu01g00387 335 ProSiteProfiles Myb-like domain profile. 34 88 IPR001005 -
Adu01g00387 335 CDD SANT 153 198 IPR001005 -
Adu01g00387 335 SUPERFAMILY Homeodomain-like 147 201 IPR009057 -
Adu01g00387 335 Gene3D - 33 101 - -
Adu01g00387 335 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677
Adu01g00387 335 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 315 - -
Adu01g00387 335 SMART sant 150 200 IPR001005 -
Adu01g00387 335 SMART sant 38 90 IPR001005 -
Adu01g00387 335 ProSiteProfiles SANT domain profile. 154 202 IPR017884 -
Adu01g00387 335 MobiDBLite consensus disorder prediction 215 251 - -
Adu01g00387 335 ProSiteProfiles Myb-like domain profile. 146 198 IPR001005 -
Adu01g00387 335 MobiDBLite consensus disorder prediction 209 251 - -
Adu01g00387 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 202 IPR017930 -
Adu01g00387 335 SUPERFAMILY Homeodomain-like 40 96 IPR009057 -
Adu01g00387 335 Gene3D - 152 202 - -
Adu01g00387 335 MobiDBLite consensus disorder prediction 264 283 - -
Adu01g00387 335 CDD SANT 41 88 IPR001005 -
Adu01g00387 335 ProSiteProfiles SANT domain profile. 37 84 IPR017884 -
Adu01g00387 335 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 315 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00387 Adu-Chr1 5026144 5027557 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu01g00387 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00387 - - cam:101514273 405.986