Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00378 ATGTCTTACTCGAGGAGATCAAGGTATTCTCCTTCTCCTTCCCCATCCCCATACAAGGGGTACAGCAGGTACAGCAGGTCCTTATCCAGGTCTCTTTCAAGGTCAAGATCAAGATCGAGAAGCCATTCAAGGAGCGTCTCAAGTGATGCAGAAAATCCTGGAAATAACTTGTATGTGACTGGATTATCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAACGGTCATAGATGTACATCTTGTAGTTGATCCGTGGACAAGAGAATCACGTGGGTTTGGCTTTGTGACAATGGCAAATCTTGAGGATGCTGATCGGTGTGTGAAATATTTAAACCGCTCTGTACTTGAAGGGCGTGTAATCACAGTGGAGAAGGCCAGAAGGCGACGTGGCCGAACCCCAACGCCTGGAAGATATCTCGGGCTAAGGACTATTCGAGCACGCCGTCGCTCACGCTCCCCAAGCTACTCTTCTAGGCGCTCTCCTAGCTATTCCCCCTACCGAAGAAGCTATAGTCGTTCGCCATATTCTCCGGATCGTAGTAGGAGTCCCTCTTATTCTCCTGACTATCGCCGTAGAAGGTCTTACTCTCCTGACTACCGGCGAAGGAGGTCTTACTCTCCATATTACTACAGTCGCCGCAGGTCCCCATATTCTCCATATTATAGTCGTCGCAGGTCGTATTCGCGATATGATCGTTACGAGCGGCGGAGGTCATATTCGCGGTCTCAATCCCCATACAGCAGGTCACCTGTCAGTTATCGTGACAGATCATACTCTCCCTATGACTCAAGGTATGACTCGCCTGATGATCGCTATTACAGAAGGCACCACAACAGGTCAGTTTCTCCAAGTGTCTCCCCTCCCCCAAGGCGAAGGTCGAGGAGAAGCTACTCGCGGAGTGTCACTCCTGTTCGAATGAGGAGCTGCTCTCGAAGCATCTCTCCCCGACGCAGCAGGAGGAGCTACTCACGAAGTGTTTCTCCACCAAGGAAAAGTTCTGGGAGGAGCCATTCAAGAAGCTCTAAAAGGAGTGGTGGTTATTCCAAACGTAGTAGGAGCCCAAGTCCAAGTGTGAGTGCAAGTTCAAGATCATTTTCAAGGTCCAACACTCCTGGATCTGCTTCTCCTTCAACTTAG 1155 0.4987 MSYSRRSRYSPSPSPSPYKGYSRYSRSLSRSLSRSRSRSRSHSRSVSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGTVIDVHLVVDPWTRESRGFGFVTMANLEDADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTIRARRRSRSPSYSSRRSPSYSPYRRSYSRSPYSPDRSRSPSYSPDYRRRRSYSPDYRRRRSYSPYYYSRRRSPYSPYYSRRRSYSRYDRYERRRSYSRSQSPYSRSPVSYRDRSYSPYDSRYDSPDDRYYRRHHNRSVSPSVSPPPRRRSRRSYSRSVTPVRMRSCSRSISPRRSRRSYSRSVSPPRKSSGRSHSRSSKRSGGYSKRSRSPSPSVSASSRSFSRSNTPGSASPST 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00378 384 SUPERFAMILY RNA-binding domain, RBD 45 160 IPR035979 GO:0003676
Adu01g00378 384 MobiDBLite consensus disorder prediction 132 384 - -
Adu01g00378 384 MobiDBLite consensus disorder prediction 46 61 - -
Adu01g00378 384 MobiDBLite consensus disorder prediction 353 384 - -
Adu01g00378 384 Gene3D - 7 139 IPR012677 -
Adu01g00378 384 MobiDBLite consensus disorder prediction 265 283 - -
Adu01g00378 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Adu01g00378 384 SMART rrm1_1 56 129 IPR000504 GO:0003723
Adu01g00378 384 MobiDBLite consensus disorder prediction 231 247 - -
Adu01g00378 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Adu01g00378 384 MobiDBLite consensus disorder prediction 325 340 - -
Adu01g00378 384 MobiDBLite consensus disorder prediction 248 262 - -
Adu01g00378 384 MobiDBLite consensus disorder prediction 161 189 - -
Adu01g00378 384 MobiDBLite consensus disorder prediction 1 32 - -
Adu01g00378 384 PANTHER TRANSFORMER-2-RELATED 207 289 - -
Adu01g00378 384 PANTHER TRANSFORMER-2-RELATED 10 224 - -
Adu01g00378 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 10 224 - -
Adu01g00378 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 207 289 - -
Adu01g00378 384 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00378 Adu-Chr1 4931837 4935203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00378 56 162 Eukaryotic Initiation Factors Gene Family AT2G36660 31.776 2.56e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00378 - - adu:107494646 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00378 01 4931837 4935203 Adu01g00378 01 4931837 4935203 ECH