Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00353 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCGGATCCACATTCCTTTCAACCTAGTGGTGTTTGTTCTGAGCCTTGGTGGCATGGTGGTGGCTACAGTGCTATCCCTCAAGCAATGCCTGGTGCAAATGCATCCAATTCCTCCTCTCTTGAATGCCCTAATGGTGAATCAGAATCCAATGAGGAAGGTCAGTCCTTATCCAATAGTGGGATGAATGAGGAAGATGATGATGCTGCCAAGGATTCACAACCTGCCGATCCTAATCAATCAGGAAATTATGGGCAAGAAAACCAAGGGATGCAGCATTCTGCACCTTCAATGCGCGAAGAAGGCCTCGCTCAGGCTCCACAGCTGGAACTCGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTACTATGGGGGCATGATGGCAGCTTATGGACCCCAGCAATTGGGATTTGCTCCTTTTATAGGAATGCCCCATGCCAGAATGCCATTGCCTCTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCTAAGCAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGAGCAAAAGCAGAACTTGAAAAGAAGCTAATAAAATCCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACCGGAGGGCGTTTTGCAAAGAAATCTGAAGTTGAGGGCTCAAACAAGGGCAAGGAAAAGGATGGTTCAGGTCCAGTCCTGTCATCACAGTCAATCAGTTCATCTGGTTCTGAACCTTTGCCTTGCGATTCCAATCAAACTTGGAACTCTCCCAATGTGCAACTAAATGCAAGGGGATCGAAAGTGCACGACAAATACGAAAATGGCAGTGGCTCCTACCACAGTCATAATGGTTTGCAATCTTATCATTTGCATTCTGGTGACAGAGTGGACGAAGGGGACTGTTCGGGTCAGCAACGGGGAAGCATCACCAACGAGCACGCATCGGCGAGGCGCCTTGCTATTCAGTAG 1020 0.4775 MQSKSETANRLRSDPHSFQPSGVCSEPWWHGGGYSAIPQAMPGANASNSSSLECPNGESESNEEGQSLSNSGMNEEDDDAAKDSQPADPNQSGNYGQENQGMQHSAPSMREEGLAQAPQLELVGHSIACATNPYQDPYYGGMMAAYGPQQLGFAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSEVEGSNKGKEKDGSGPVLSSQSISSSGSEPLPCDSNQTWNSPNVQLNARGSKVHDKYENGSGSYHSHNGLQSYHLHSGDRVDEGDCSGQQRGSITNEHASARRLAIQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00353 339 MobiDBLite consensus disorder prediction 1 20 - -
Adu01g00353 339 MobiDBLite consensus disorder prediction 206 225 - -
Adu01g00353 339 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Adu01g00353 339 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Adu01g00353 339 MobiDBLite consensus disorder prediction 226 242 - -
Adu01g00353 339 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Adu01g00353 339 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Adu01g00353 339 MobiDBLite consensus disorder prediction 1 114 - -
Adu01g00353 339 MobiDBLite consensus disorder prediction 204 339 - -
Adu01g00353 339 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 330 - -
Adu01g00353 339 MobiDBLite consensus disorder prediction 247 280 - -
Adu01g00353 339 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Adu01g00353 339 Gene3D - 171 233 - -
Adu01g00353 339 MobiDBLite consensus disorder prediction 85 106 - -
Adu01g00353 339 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 330 IPR001289 GO:0003700|GO:0006355
Adu01g00353 339 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Adu01g00353 339 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00353 Adu-Chr1 4575757 4579744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00353 16 273 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.985 7.11e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Adu01g00353 CBFB_NFYA 6.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00353 K08064 - gmx:100808378 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00353 01 4575757 4579744 Adu01g00353 01 4575757 4579744 ECH