Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00330 ATGCGTAGCGATGATGATGCAGCGAAAGAGAGAAGGAGGAAAAGACAAAAAATACAGCAGCAACAACAACAAAAGAATGACGATAAGGAGAAAACACGCGAAGAAGAAGGAACGCGAAAAAGGAGGAGAGGGAGGAACGCGAAGAAGAATGCAAAGAAGAAGAAGACGCTCTACACTTTTCTGTCATCAAATATCACCATCCCATACCAATCAAAACTGCTGGTTACAGGAGGAAGAGAAATATTGATCAACCTGGGAAAGCACGGAGAGTTGTTGTTGGAAGGAATCTTGGATTGCATCCATGAAATCACAACGGCACTGGCCTTCGCTGACAGGATGAGCGATTCTGCTTACAAGGTCGACACCACCTCCCGCCTTGCTCAATGGCGAATCGACAACTTGGCCTCTTGCACTTACCGCAAATCCGATCCTTTCAAGATCGGAAAATGGAACTGGCATTTGTCTGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTATCCAGAAATTTCGAATCTAACACGAGATAACCCCCCGATTGCGTCCTTCATCATTAGGGTGGTTAGTTCTGTTGGAGATCGCAAGTCCCTCACTCATCCAGAGATAAGAGATAAGCTGATAAAGAGCAACGAGGACTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATCGACGTTGAGTTCCTTGATTTGAAGACTGCATCCCCAAACGGTGAGGAACCTTGTTCTATTTGGGCTGCCGGTTTTACTCAGCAAAGATCAAATGCGACGGCGCTTGAGACTCTGGGTAAAATGCTAACAGAAGGGATTCACACAGACATAACCATCAATGCTTCGGACGGAAGCATAGGAGCTCACAGGGCAGTTCTGGCTGCCCGGTCGCCTGTGTTTCGCAGCATGTTTTCGCACGATCTCAAGGAGAAAGAGCTGTCAACTGTCAACATCCAAGACATGTCGATTGAAGCTTGCCAGGCACTTCTAAATTATCTCTATGGGATCATTAAGAACGACGAGTTCTTGATGCATAGATTAGCCCTTCTACATGCTGCTGATAAATATGACATATCTGACTTGAGAGAGGCATGTCATGAGAGTCTTCTAGAAGACATTGACACGAAAAATGTCCTCGAGAGGCTCCAGAATGCGTCGCTGTATCGGCTGATGAAACTGAAGATGAGCTGTATTAGATATCTTGTGAAATTTGGTAAGGTATTCGAAATTCGCGATGATTTCAATTGCTTCATGCAAAATGCAGATAGGGATTTGATTGCTGAAGTCTTCCATGAAGTTCTTGATGCATGGAAAGGATTCTGA 1323 0.4452 MRSDDDAAKERRRKRQKIQQQQQQKNDDKEKTREEEGTRKRRRGRNAKKNAKKKKTLYTFLSSNITIPYQSKLLVTGGREILINLGKHGELLLEGILDCIHEITTALAFADRMSDSAYKVDTTSRLAQWRIDNLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLYPEISNLTRDNPPIASFIIRVVSSVGDRKSLTHPEIRDKLIKSNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNGEEPCSIWAAGFTQQRSNATALETLGKMLTEGIHTDITINASDGSIGAHRAVLAARSPVFRSMFSHDLKEKELSTVNIQDMSIEACQALLNYLYGIIKNDEFLMHRLALLHAADKYDISDLREACHESLLEDIDTKNVLERLQNASLYRLMKLKMSCIRYLVKFGKVFEIRDDFNCFMQNADRDLIAEVFHEVLDAWKGF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00330 440 MobiDBLite consensus disorder prediction 20 41 - -
Adu01g00330 440 MobiDBLite consensus disorder prediction 1 52 - -
Adu01g00330 440 CDD BTB_POZ_ZBTB_KLHL-like 274 356 - -
Adu01g00330 440 Gene3D Potassium Channel Kv1.1; Chain A 252 403 IPR011333 -
Adu01g00330 440 ProSiteProfiles BTB domain profile. 275 334 IPR000210 GO:0005515
Adu01g00330 440 PANTHER OS08G0495500 PROTEIN-RELATED 113 440 IPR044714 -
Adu01g00330 440 SUPERFAMILY POZ domain 259 371 IPR011333 -
Adu01g00330 440 SMART BTB_4 275 373 IPR000210 GO:0005515
Adu01g00330 440 Pfam BTB/POZ domain 267 371 IPR000210 GO:0005515
Adu01g00330 440 PANTHER OS08G0495500 PROTEIN 113 440 - -
Adu01g00330 440 Coils Coil 4 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00330 Adu-Chr1 4254284 4261885 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Adu01g00330 BTB 2e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00330 K10523 - gmx:100790186 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00330 01 4254284 4261885 Adu01g00330 01 4254284 4261885 ECH
Adu01g00330 01 4254284 4261885 Adu07g01451 07 29027737 29033899 PCT