Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00315 ATGGTGCAACATTCGGTGATCATAAACAACATGATTGAAGATGGGTCGTACAACCATGAAGAGAGCAAGATTCCATTGGATTGCGTTGACTCCAAGACTCTCAAGAAGGTCATTGATTATTGTACACACCACACTCACCACCACAACGACAACCAAGAAGATCTTGAGGCTTGGGATGCCCAATTTCTCAATGTTGATTCTAACGGCCTTTATGATTTGTTGATGGCAGCAAATTATCTTGAGATTAGAAATCTCTTGGATCTGATCTACGGAACTATAAAAAATATGATAAAGGGAAAGAAAATAGATGAGATACGCAGAATCTTCAACATCAAAGATCATGGCTTCACTCCGGAAGAGGAAGAACAAAATCGCAAGGAGAAACGGGGTCGTTTGCCAATCCCCAACCTCACCCCATCCCCAAATGCCCTCAAGCCTCAACGGCTCTCCTCGGGGTCTCTTTCTCGCCACTCTCTCCTCGGCGTTCGTCTTCTTGCTTGGAGCCTCGCCGTCAGCTTCCTTGGCGCAACCCGATTTGTGATGGGTTCGCCGCCGAAGAAGATCATGCTATGCAGTTCGGAAAAGGAGATTTTCAATGTGGAAGAACAAGTGATGGTGCAACATTCGGTGATCATAAACAACATGATCAAAGATGGGTCGTTTAACCATGAAGAGAGCAAGATTCCACTGGATTGCGTTGACTCCAAGACCCTCAAGAAGATCATCGAGTATTGTACGCACCACACTCACCACCACAACGACAACCAAAAAGATCTTGAGGCTTGGGATGCTCAATTTCTCAATGTTGATCCTAACACCCTTTATGATTTGTTGATGGCAGCAAATTATCTTGAGATTAGAAATCTCTTGGATCTGATATACGGAACTATAAAAAATATGATAAAGGGAAAGAAAATAGATGAGATACGCAGAATCTTCAACATCAAAGACCATGGCTTCACTCCTGAAGAGGAAGAACAAAATCGCAAGGATGATGACGGTGGATACGGGTTCCATGCTGGTTCTCTTGTGGATATGATGCCAGAGAAAGATGATGATGGTTGGTTTGCAAGTGGAGGGTGGAAAAGTGAGGATGGAAGGCTTAGCTGTGGGTATTCAAGCTTCAGAGAGAAGAGAGTGACGATGGAGGATTTTTATGATATTAAAACATTGAAGATTGGTGGTCATTCAGTGTGCTTATTTGGAATATTTGATGGTCATGTTGGTTCTTTTGCTGCAGACTATTTGAAAGAGCATCTCTTTGATGGTGGCTGA 1275 0.4322 MVQHSVIINNMIEDGSYNHEESKIPLDCVDSKTLKKVIDYCTHHTHHHNDNQEDLEAWDAQFLNVDSNGLYDLLMAANYLEIRNLLDLIYGTIKNMIKGKKIDEIRRIFNIKDHGFTPEEEEQNRKEKRGRLPIPNLTPSPNALKPQRLSSGSLSRHSLLGVRLLAWSLAVSFLGATRFVMGSPPKKIMLCSSEKEIFNVEEQVMVQHSVIINNMIKDGSFNHEESKIPLDCVDSKTLKKIIEYCTHHTHHHNDNQKDLEAWDAQFLNVDPNTLYDLLMAANYLEIRNLLDLIYGTIKNMIKGKKIDEIRRIFNIKDHGFTPEEEEQNRKDDDGGYGFHAGSLVDMMPEKDDDGWFASGGWKSEDGRLSCGYSSFREKRVTMEDFYDIKTLKIGGHSVCLFGIFDGHVGSFAADYLKEHLFDGG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00315 424 PANTHER SKP1 3 128 IPR016897 GO:0006511
Adu01g00315 424 PANTHER SKP1 185 331 IPR016897 GO:0006511
Adu01g00315 424 SUPERFAMILY POZ domain 187 251 IPR011333 -
Adu01g00315 424 ProSitePatterns PPM-type phosphatase domain signature. 400 408 IPR000222 GO:0043169
Adu01g00315 424 SUPERFAMILY PP2C-like 365 421 IPR036457 -
Adu01g00315 424 SUPERFAMILY Skp1 dimerisation domain-like 55 127 IPR036296 GO:0006511
Adu01g00315 424 SMART skp1_3 2 82 IPR001232 GO:0006511
Adu01g00315 424 SMART skp1_3 185 286 IPR001232 GO:0006511
Adu01g00315 424 Pfam Skp1 family, dimerisation domain 288 331 IPR016072 GO:0006511
Adu01g00315 424 Pfam Skp1 family, dimerisation domain 84 128 IPR016072 GO:0006511
Adu01g00315 424 SUPERFAMILY Skp1 dimerisation domain-like 259 331 IPR036296 GO:0006511
Adu01g00315 424 MobiDBLite consensus disorder prediction 117 132 - -
Adu01g00315 424 MobiDBLite consensus disorder prediction 117 149 - -
Adu01g00315 424 Gene3D - 361 422 IPR036457 -
Adu01g00315 424 CDD BTB_POZ_SKP1 187 301 - -
Adu01g00315 424 Gene3D Potassium Channel Kv1.1; Chain A 183 333 IPR011333 -
Adu01g00315 424 Gene3D Potassium Channel Kv1.1; Chain A 1 129 IPR011333 -
Adu01g00315 424 SUPERFAMILY POZ domain 2 47 IPR011333 -
Adu01g00315 424 Pfam Skp1 family, tetramerisation domain 186 249 IPR016073 GO:0006511
Adu01g00315 424 Pfam Skp1 family, tetramerisation domain 2 45 IPR016073 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00315 Adu-Chr1 3973621 3982425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00315 342 422 PP2C-type Phosphatase Gene Family AT5G53140 71.605 6.18e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00315 K17506 - gmx:100805795 159.458