Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00247 ATGCCCATGATTCTTCCTATATCTTCATCCTTAAATGAACAGATGGAATCGGATCTTGGCAAACTCTTCATTGGAGGGATATCTTGGGACACCGATGAGGAACGTCTCAAGGAATATTTTGGAAAATATGGGGAAGTTATAGAGGCTGTGATCATGAGAGATCGCACCACCGGTCGTGCTCGTGGTTTCGGCTTTGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTCATTGTGGATAAGCACATAATCGATGGCCGCACGGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAGTCCATAAATAGACAGTCCGGTAGTGCGAATGCCTCTCCTGGTCCTGGGCGCACGAAAAAGATCTTTGTTGGAGGTTTGCCATCAACTATCACAGAAAGCGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTAATGTATGATCACAATACTCAAAGGCCAAGAGGTTTTGGTTTCATCACATTTGATTCGGAAGAAGCTGTGGATCGAGTTCTTTATAAAACTTTTCATGAACTGAATGGGAAGTTGGTCGAAGTCAAGAGAGCAGTTCCGAAAGAGCTATCCCCTGGCCCCAGCCGAAGTCCATTGATAGGATATAACTATGGTATAAATAGGGCCAGTAGCTATCTAAACAACTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGCGTCAGGATGGATGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGCGGGTTTACTCCATTCGGCAACACTGCTTATGGAATGGGAGTGAATCTTGAGTCAGGATTGAGCCCAAGCTATGGAGGAACTTCTAGTTACGGGAGCAATATAGGATACGGTCGAATATTTAGTCCTTTCTACAGTGGAAACTCGAGCAGATACACCACTCCTATAGGCTATAGTGGGGGAAATAGCAGAAGCGACTCTATCATGAACTCACCTTCTCGAAATGTCTGGGGAAATGGAGTCCTGAATAACGCTAATAACGCAGTCAGTCCTGGTTCTTTCTTGGGATCTGGAAGTGGGAGCTTTGGTGTTTCAATTGGAAATAGTGGTGCTAATTGGGGTCCATCTATTCCATCCCAAGCCGGAGGAGCTGCTTCGGGCTATGCTACGGGGAATAATGTTTATGAAGGTGGAGAATCCGGCTTTGGGTTAGGCGGGGGAGGGTATGGAAGAAACAGTGGTACGGGTATGACTCCATCCTCTACGTTCGCTGCATCAACTGGTAGTTTTGAAGGATCCTATGGGGATTTATACCGAACTGGCAGTGGTTCAGTTTACAATGACTCTGCTTGGCGAACCGCTTCTTCTGAGATGGATGGTTCTGGCTCTTTTGGTTATGGTCTTGGTGGTATTGCTTCAGACGACCCTGTAAAGACTTCTGAGGGTTATATTGGAAGCTACAATGTTACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1482 0.4507 MPMILPISSSLNEQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQQSINRQSGSANASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKLVEVKRAVPKELSPGPSRSPLIGYNYGINRASSYLNNYAQGYSMSPIGGYGVRMDGRFSPLTSGRSGFTPFGNTAYGMGVNLESGLSPSYGGTSSYGSNIGYGRIFSPFYSGNSSRYTTPIGYSGGNSRSDSIMNSPSRNVWGNGVLNNANNAVSPGSFLGSGSGSFGVSIGNSGANWGPSIPSQAGGAASGYATGNNVYEGGESGFGLGGGGYGRNSGTGMTPSSTFAASTGSFEGSYGDLYRTGSGSVYNDSAWRTASSEMDGSGSFGYGLGGIASDDPVKTSEGYIGSYNVTSRQSNRGIAA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00247 493 Gene3D - 100 208 IPR012677 -
Adu01g00247 493 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 15 493 - -
Adu01g00247 493 SUPERFAMILY RNA-binding domain, RBD 119 207 IPR035979 GO:0003676
Adu01g00247 493 SUPERFAMILY RNA-binding domain, RBD 5 117 IPR035979 GO:0003676
Adu01g00247 493 MobiDBLite consensus disorder prediction 100 114 - -
Adu01g00247 493 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 15 493 - -
Adu01g00247 493 MobiDBLite consensus disorder prediction 92 119 - -
Adu01g00247 493 CDD RRM1_hnRNPA_hnRNPD_like 22 92 - -
Adu01g00247 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 96 IPR000504 GO:0003723
Adu01g00247 493 SMART rrm1_1 21 92 IPR000504 GO:0003723
Adu01g00247 493 SMART rrm1_1 121 193 IPR000504 GO:0003723
Adu01g00247 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 89 IPR000504 GO:0003723
Adu01g00247 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 181 IPR000504 GO:0003723
Adu01g00247 493 Gene3D - 20 99 IPR012677 -
Adu01g00247 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Adu01g00247 493 CDD RRM2_DAZAP1 118 197 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00247 Adu-Chr1 3176875 3181391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00247 19 194 Eukaryotic Initiation Factors Gene Family AT2G23350 25.281 3.36e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00247 K14411 - gmx:100805131 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00247 01 3176875 3181391 Adu01g00247 01 3176875 3181391 ECH
Adu01g00247 01 3176875 3181391 Adu07g00219 07 2118487 2120844 PCT