Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00223 ATGGAGGTTCCTTCTGCAAAATGGGTTCTCAATGCTTGCTTGTTGCTGCTCTTTCTGCTCCTCATTGGAGAAGCCATGGCCACATCACAGATCTCTGACCTCAAGGTGAAAGAGGCGGAGGAATTAAATGAACGTGCTGCTGTAACTGACCCGGAAGAGGTGGTTTCCATGGTTCAGATGGCAATGAAGAATAGCACTGAGAGAAGGAAGCTAGGATTCTTCTCCTGTGGAACTGGTAATCCAATCGATGATTGCTGGCGCTGCGACCCGAATTGGCAGAAAAACAGGAAGAGACTAGCAGATTGTGGCATTGGATTCGGGCGGAATGCGATCGGTGGCCGCGACGGAAAGTTCTATGTTGTAACTGACCCTAGAGATGATGACCCTGTTAACCCAAAGCCAGGGACATTGCGGCACGCGGTGATCCAGGACAGGCCACTATGGATTGTGTTCAAAAGGGATATGGTGATCCAGCTGAAACAGGAGCTGATTATGAACAGCTTCAAGACCATTGATGGAAGAGGAGCCAATGTGCACATTGCCAATGGAGGTTGCATAACAATTCAGTATGTTACCAATGTGATCATCCATGGACTCCATATCCATGACTGCAGGCCTACTGGGAATGCCATGGTGAGAAGCTCCCCCACCCATTTCGGGTGGAGGACTATGGCTGATGGGGATGCCATCTCCATTTTTGGATCAAGCCATATTTGGGTTGATCATAATTCATTGTCACATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCTATAACTATTTCTAACAACCATCTCACCCACCACAATGAGGTGATTCTGTTAGGGCACAGTGACTCATACACAAGAGACAAGCAAATGCAGGTGACCATTGCCTATAACCATTTTGGAGAAGGACTCATCCAGAGAATGCCAAGATGTAGACATGGGTATTTCCATGTGGTGAACAATGACTATACTCATTGGGAGATGTATGCAATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAATAGATACAATGCTCCAGCTAACCCATTTGCTAAAGAGGTACAAAATAGTACAATCCAATCCAAGTGCTTATCCAAACTCATTTTTTCTTCAACTACTTAA 1128 0.4645 MEVPSAKWVLNACLLLLFLLLIGEAMATSQISDLKVKEAEELNERAAVTDPEEVVSMVQMAMKNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPANPFAKEVQNSTIQSKCLSKLIFSSTT 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00223 375 SUPERFAMILY Pectin lyase-like 56 367 IPR011050 -
Adu01g00223 375 Gene3D - 79 374 IPR012334 -
Adu01g00223 375 SMART amb_all 154 351 IPR002022 -
Adu01g00223 375 Pfam Pectate lyase 161 343 IPR002022 -
Adu01g00223 375 PANTHER PECTATE LYASE 35 359 - -
Adu01g00223 375 PRINTS Pollen allergen Amb family signature 162 178 IPR018082 -
Adu01g00223 375 PRINTS Pollen allergen Amb family signature 226 247 IPR018082 -
Adu01g00223 375 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
Adu01g00223 375 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Adu01g00223 375 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Adu01g00223 375 PRINTS Pollen allergen Amb family signature 126 151 IPR018082 -
Adu01g00223 375 PANTHER PECTATE LYASE 18-RELATED 35 359 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00223 Adu-Chr1 2946417 2949683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00223 8 356 Polysaccharide Lyase AT1G04680 82.720 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00223 K01728 - gmx:100808253 660.603