Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00201 ATGGGTAGCGAAGAAGAGAAGGTTCATGGGGAGCTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAACGGGCAAGATTATTACAGGAAGCAGATTTGGTGTTGCACAGCACTAATCTTTTTGCTGAAGAAGAGAAAGTAGAGGCTCTTGACCCCACAGATGTTGAACCAGAGCCACTGGAGGAAAGTTGTTATTCTGTTGGATCTAAATGCAGATTCCGTCACAAAGATGGGAGATGGTACAATGGTCAAGTGGTACAGTTGGATAAGTCAGCAGCGAAGCTTTCATTCCTTACTCCCACATCTGAGAACATGCTGATCTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTGTCACATGGAGTTGATGTTCAATTGTCCTCACTGAAGAAATATGTCCCAACAATATGGAAGCCATCCTTGGCGGGGTCGAGTATATGGGCAGTCTCAAATGCTCATGCGGGCATTTGGAAGCGAGCTGAGCTCGAGTCTTGGGACGAGGATGTCGGAGCTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCAGCAAAGCTTGGGGCTGAAGAAATGGTATTGTCTGAGTATGCGGAAGTGAGTGACACAGAGAGTGATTCCAGCTTAGAACACTCCGACTCTAGTGACTATGAGGAAGAGGAATTGCAAGGTTTAGGATTTCTTGAGAGCACCAACCTACAAAGGGGTGTTCAGACCGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGCGTAGCATCGAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGCGTAACTGGTCAGGGAATGCTAGATCCCATAACAGTGAAAGTCCTACCGGCAAAGCAATCCTTAGATCATGCACTTGAGTCTCAAAAAGGAGAAGAGGACACAGAGAAACAAAGCAAGAAACGGAGCCGAGGTGGTAAAAGAAAGCGCGATAAGAAATTCATGGAAGCAATTCGAGCAGCAAAAGAAGAAGAATCGAACGTAGACGTCTTTACACTAATAAATAATCAACTTGCAGTGCACGGCCAAGCTTTAAATGGTGGATCAGGGAAAAAGCAGAGCAAAGATTCCGCCGAAGTTAAAAAGGTGGATAGGCGAACGTTGATTGCGTATGAGGATGAGGTGAAGGATTTGAAGTTGAGGGTTGAGAAGCTGGAAGCAATAGTGAATATCAACAGAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAGCAGAGACACGCAAGGCATTAGCTGAAGCTGAAGCCACGCATGCCTCTGCATCAAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1374 0.4483 MGSEEEKVHGELVQAIKDAEEGLLHLKRARLLQEADLVLHSTNLFAEEEKVEALDPTDVEPEPLEESCYSVGSKCRFRHKDGRWYNGQVVQLDKSAAKLSFLTPTSENMLICKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYVPTIWKPSLAGSSIWAVSNAHAGIWKRAELESWDEDVGAGQVVFRDDGSSAKLGAEEMVLSEYAEVSDTESDSSLEHSDSSDYEEEELQGLGFLESTNLQRGVQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVTGQGMLDPITVKVLPAKQSLDHALESQKGEEDTEKQSKKRSRGGKRKRDKKFMEAIRAAKEEESNVDVFTLINNQLAVHGQALNGGSGKKQSKDSAEVKKVDRRTLIAYEDEVKDLKLRVEKLEAIVNINRKEKAVYEAAMRKLAETRKALAEAEATHASASNAVVSKEKEKRWLKF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00201 457 ProSiteProfiles Zinc finger C3H1-type profile. 106 133 IPR000571 GO:0046872
Adu01g00201 457 Pfam G-patch domain 259 301 IPR000467 GO:0003676
Adu01g00201 457 SMART c3hfinal6 106 132 IPR000571 GO:0046872
Adu01g00201 457 Coils Coil 417 451 - -
Adu01g00201 457 Coils Coil 386 413 - -
Adu01g00201 457 Pfam CCCH-type zinc finger 111 131 IPR041367 -
Adu01g00201 457 SMART G-patch_5 257 303 IPR000467 GO:0003676
Adu01g00201 457 MobiDBLite consensus disorder prediction 438 457 - -
Adu01g00201 457 ProSiteProfiles G-patch domain profile. 259 305 IPR000467 GO:0003676
Adu01g00201 457 MobiDBLite consensus disorder prediction 303 331 - -
Adu01g00201 457 SUPERFAMILY CCCH zinc finger 107 131 IPR036855 GO:0046872
Adu01g00201 457 MobiDBLite consensus disorder prediction 303 319 - -
Adu01g00201 457 Gene3D - 83 143 - -
Adu01g00201 457 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 7 457 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu01g00201 G-patch 2e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00201 - - gmx:100796284 678.707