Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00158 ATGGCTCTAACAAATGCTTTTACTCAAAAGGTTGATCGTGTTGCAGACATCAATGCAACGAAACTGGCCTGGAATTTAGTTGTTGGAGTTGTTCGTTTGTACGAAATTCCTAGCTCATGGAATCCCACAGATGTATGCAGCTTAGAATTGGTGCTCCAGGATGAAATGGGTGATCGTATACATTGCTCCATTCCGAAGGCAAATGTGGTGGTCTTTAAGACAGTTGTTCGTGAGTTTGGAATTTACTCAATGAGAAATTTCATTGTTCAGCCAAATTCAAAAGATTGTGTTGGTCACATTGTTGGAAAGGAGGATGTTAGACCAATGGTTACAAAATCAGGTCAAGAAAGTAAATGCATGGCACTATACCTGGAGGATCTTGAGAAAAATAAGATCAAGTGTACCATATTTGGTGAAATGATTGGTAAGTTAACTCCATTTATCAATAAGGATGATGGTGAGCCACTGATCTTGGTCGCTCAACTCTTCAAGCCAAATCAGTACCTCAATCAGATTAATATTCAGAATAGTCTTTATGCCTCGAGAGTGTTCCTGAACCCTGATTTTCCTGATGTTGTTGCATTCAAGAATCGCCTACTGAAAGAAGGTAACATTGGATCCCAACGAATTAATCACATAGAGACCCAACCTCAGTATTCTGTGAGTGATGAACTTTCGGGAGGTTCCTTTCCAATCAATACAATTGAAGAAGTTTTGAACATGACTTATGAGGTCTCCACTTGGATTTTAGCCACTATAGTGTCTGTTGATGTTGGCACCCGCGATTGGTATTATGCCTCGTGTAAGAATTGTCCTAGAAAAGTTGTGGAGAATAAAGGTCGATATTATTGTGAGCATTGTCGAAAAGTGGGATTTAATGCTCCATTGAGGTATCGACTTAATGTTGTAGTCATTGATGGGACTGGATGCATTAATATAATGCTTTGGAATCAAGAGGCAAAAATCATTCTCGGAAAATCTGCTAATGACATAAGGGATCTAATGAAAGATGGTGATGAGAATGCCTGCTTAAAAGCTTTTGAACCTATAATTGATAGGAAGTTTCTTTTTAAATTGTCTATCTCACAGAAAAATCTGACCTCTGTGGACCAAGCTTATAATGCTGTTAAGATTAGTGATGATGAGGCACTGATTGATCTCTATTCATCCCACAGTTCTTCCATAGATATTGGAGGGGTTGAACAAGGCCTTTCAAACGTAGTGTCTACAACTGGAAATAATGACCTTGACTTAGATGGGAATGGAGCTGCTATTGTTTCACTATCAAAGGATTCTGGCATTGAGAGCATCTTTGAAAGCGGGTTAGATACTCCTGGTAAATGTGTTATAGCAGATTCTGCTCCAAGCTTGGGTGTTAGTGGACTTACTAATCCGGAAGGCCAGGGATCCAGTAATAAGACTTTCAAACGTGGTTCTACCAAGAGGAAAATTGAGTGA 1458 0.393 MALTNAFTQKVDRVADINATKLAWNLVVGVVRLYEIPSSWNPTDVCSLELVLQDEMGDRIHCSIPKANVVVFKTVVREFGIYSMRNFIVQPNSKDCVGHIVGKEDVRPMVTKSGQESKCMALYLEDLEKNKIKCTIFGEMIGKLTPFINKDDGEPLILVAQLFKPNQYLNQINIQNSLYASRVFLNPDFPDVVAFKNRLLKEGNIGSQRINHIETQPQYSVSDELSGGSFPINTIEEVLNMTYEVSTWILATIVSVDVGTRDWYYASCKNCPRKVVENKGRYYCEHCRKVGFNAPLRYRLNVVVIDGTGCINIMLWNQEAKIILGKSANDIRDLMKDGDENACLKAFEPIIDRKFLFKLSISQKNLTSVDQAYNAVKISDDEALIDLYSSHSSSIDIGGVEQGLSNVVSTTGNNDLDLDGNGAAIVSLSKDSGIESIFESGLDTPGKCVIADSAPSLGVSGLTNPEGQGSSNKTFKRGSTKRKIE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00158 485 CDD RPA1_DBD_A_like 26 94 - -
Adu01g00158 485 CDD RPA1_DBD_C 249 381 IPR013955 -
Adu01g00158 485 SUPERFAMILY Nucleic acid-binding proteins 231 379 IPR012340 -
Adu01g00158 485 PANTHER BNAC07G49340D PROTEIN 95 427 - -
Adu01g00158 485 Gene3D - 8 92 IPR012340 -
Adu01g00158 485 PANTHER REPLICATION FACTOR A 1, RFA1 95 427 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu01g00158 485 SUPERFAMILY Nucleic acid-binding proteins 13 94 IPR012340 -
Adu01g00158 485 Pfam Replication factor-A C terminal domain 260 368 IPR013955 -
Adu01g00158 485 SUPERFAMILY Nucleic acid-binding proteins 94 200 IPR012340 -
Adu01g00158 485 Gene3D - 220 387 IPR012340 -
Adu01g00158 485 CDD RPA1_DBD_B_like 95 199 - -
Adu01g00158 485 Gene3D - 93 159 IPR012340 -
Adu01g00158 485 MobiDBLite consensus disorder prediction 459 485 - -
Adu01g00158 485 MobiDBLite consensus disorder prediction 459 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00158 Adu-Chr1 2190742 2194110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00158 263 368 Core DNA Replication Machinery Family AT5G08020 36.111 2.55e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00158 - - ahf:112718168 764.607