Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00107 ATGGAAGAAAGTTCTGAAGGAACAGAGACCAGCAAAATCCGTAACATATGCATCCTTGCCCACGTGGACCACGGCAAGACCACCCTCGCCGACCACCTCATCGCTGCTGCAGGTGGCGCCCTCCTCCATCCAAAACTCGCCGGAAGAGTCCGCTTCATGGACTACCTCGACGAGGAGCAGCGCCGCGCCATCACCATGAAGTCCTCCTCCATCTGCCTCCGTTACGGCGACCACTCCATCAACCTCATCGTGGACTTCTGCAGCGAGGTTTCCACCGCCGCCCGCCTCAGCGACGGCGCACTCCTCCTCGTCGACGCTGTCGAAGGCGTCCACATCCAAACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCTCCCCTTGCCTCGTCCTCAACAAGATCGACCGCCTCATCACGGAGCTTAAACTCACGCCGTCCGAGGCCTACGTCCGCTTATTGCGCATCGTTCAAGAAGTTAACGGCATCGTTAGCGCATTCCGTTCCGAGAAGTACCTATCTGACGTGGATTCCCTTCTTGCCACGTCAGGTATGAACCCTAACGAGATTGAGAATGAGGAAGCAGATGATGAAGCTGACGAGTTTCAACCGCAGAAAGGGAATGTGATATTCGCTTGCGCTTTAGACGGTTGGGGATTTGGAATCAATAAATTCGCTGAGATTTATGCTTCCAAGCTTGGTGCTAGTGTAAATGCGTTGTTGAAGGCTCTATGGGGACCTTGGCATTTTAATCCGAAGACGAAGATGATTGCTAAGAAGAAAGTTGGTGGTGGTGGAGACACTGGTAAGGGTAATGCGAAACCGATGTTTGTTCAGTTTGTGTTGGAACCACTGTGGCAGGTTTATGAGGGTGCGCTTAAGGGTGGTGATGAGGGTAAGGGTGTGGTTGAGAAGGTTGTTAGGTCCTTTAATTTGTCGGTGCCGGCGAGGGAGCTTCAGAATAAAGATCCCAAGGCTGTGCTTCAGGCGGTTATCAGCAGGTGGCTGCCGCTCGCGGATGCTGTGTTGTCGATGGTGGTTAGGTGTATGCCAGACCCTGCTGCAGCACAGACATACCGGATATCGCGATTGATGCCGAAGGTTGAGGTGGATAGTGAGGTTGGAGTTGATAGGAGTGTTTTGGAGGAAACAGAGCGTGTGAGGAAGTCTGTGGAGGTTTGTGATTTGAGGGAGGATGCTCCTTGTGTTGCTTTTGTGTCCAAGATGTTTGCGGTGCCGGTTAAAATGCTTCCTCCCCTGAGAGGGGAGAATGGGAATAGTTATGGCGGCGAAGGAGAAAGCGAGTCGGACGAGTGTTTCTTGGCATTTGCTAGGATATTTAGTGGGGTTTTGCATGCTGGTCAGAGAGTTTTCATTCTCTCTGCTTTGTATGATCCATTGAAAAGGGAATCAATGCAGAAACATGTGCAGGAAGCTGAATTGCAGACCTTGTATTTGATGATGGGCCAGGGATTGAAAGTAGTGACATCTGCCAAAGCAGGAAATGTTGTTGCCATTCGGGGCCTCGGCCAGCATATCCTGAAATCAGCTACTCTCAGTTCTAGCATGAATTGTTGGCCGTTTTCAAGTCTCGCATTCCAAGTTGCCCCGACGCTGAGAGTTGCAATTGAGCCGTCTGATCCAGCGGATGTGGGTGCACTGCTGAAAGGATTGAGGCTTTTGAATCGAGCAGATCCGTTTGTCGAGGTTACTGTTTCTGCAAGAGGAGAACATGTGCTCTCTGCAGCCGGGGAGGTTCACCTGGAGAGATGCATAAAGGATTTGAAGGAGAGGTTTGCAAAAGTAAGTTTGGAAGTATCACCGCCTCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGCATCCAAGATGCTGGAAAGTTTAAAAGCTTTTACTAAGAGCACAGATTATGTTGAGAAAACAACACCAAATGGTAGATGTGTTGTCCGTGTGCGTGTGATAAAACTTTTGCCTTCTCTTACAAAGGTGCTTGATGAAAGTCCTGATTTAGTTGGTGATGTTATTGGAATTAAGTCAGCGCAGACGATAAAAACATTGGATTGCCAGAGACCAAATGTTACTGAGAATGATAATCCGGCTGAGGTTCTAAGAAAACGCATTGTAGATGCAGTGGAGAGTGATGTGCTGAGCTGGAATGAGATTGATAATGATCATGCTGAGAGATGTAAATTGGAGTGGCTGAAACTTTTGAGGAGGATATGGGCTCTAGGACCTAGACAGATTGGTCCGAACATTCTCTTAACTCCTAATATTAAAGCAGAGGGTACGGATAACTCTGTTTTAGTACGGGGTTGTTCTCATGTGTCTGATAAGTTGGGCTTTGTGCCTGATTCTAGTGATGGAAATTCAGTTGCGGAGACATCTTCAAATGCAAGTCAAGCTTTGTACAAAGAAGCCGAGCGCCTTGAGAGTAGTGTCGTATCCGGGTTCGAACTGGCCACTGCCGCCGGACCCTTATGTGATGAACCTATGTGGGGTTTGGCATTTCTTGTTGAGGCGTGGATATCTCCGCTTATTGAACAGAACGATGAATCTGAAACACATCTACAATCAGAACAGTATGGGATCTTTGCAGGGCAGGTAATTGCCACTGTCAAGGATGCATGTAGAGCAGCCGTGCTTCAGAATAAACCCCGGCTTGTGGAAGCAATGTACTTCTGTGAATTGAATACACCTACTGAATGTTTGGGTCCAATGTATGCTGTACTTAACCGAAGACGGGCCCGAGTTCTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACTGTGCATGCATATGTTCCAGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTCCGCAAAGGGACTTCTGGTGCTGCAAGTGCGCTTCTTGTCCTTAGTCACTGGGAAGCACTTCCAGAGGATCCTTTCTTTGTACCCAGAACGGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTGCCAAATACAGCTAGAAAGTTAATTAACACAGTCAGACGGCGCAAGGGCCTTCCTGTGGAAGAAAAGGTTGTACAACATGGAACCAAGCAGAGGACCTGCAAGAGGTTCGATAAAACACAGAGAGAAAGGAGAACTTTCTGTGTTTTCACTTGCAATCCTCATAAAATCGCTGCTTCCACTACCTGA 3159 0.4869 MEESSEGTETSKIRNICILAHVDHGKTTLADHLIAAAGGALLHPKLAGRVRFMDYLDEEQRRAITMKSSSICLRYGDHSINLIVDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKIDRLITELKLTPSEAYVRLLRIVQEVNGIVSAFRSEKYLSDVDSLLATSGMNPNEIENEEADDEADEFQPQKGNVIFACALDGWGFGINKFAEIYASKLGASVNALLKALWGPWHFNPKTKMIAKKKVGGGGDTGKGNAKPMFVQFVLEPLWQVYEGALKGGDEGKGVVEKVVRSFNLSVPARELQNKDPKAVLQAVISRWLPLADAVLSMVVRCMPDPAAAQTYRISRLMPKVEVDSEVGVDRSVLEETERVRKSVEVCDLREDAPCVAFVSKMFAVPVKMLPPLRGENGNSYGGEGESESDECFLAFARIFSGVLHAGQRVFILSALYDPLKRESMQKHVQEAELQTLYLMMGQGLKVVTSAKAGNVVAIRGLGQHILKSATLSSSMNCWPFSSLAFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVTVSARGEHVLSAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGEASKMLESLKAFTKSTDYVEKTTPNGRCVVRVRVIKLLPSLTKVLDESPDLVGDVIGIKSAQTIKTLDCQRPNVTENDNPAEVLRKRIVDAVESDVLSWNEIDNDHAERCKLEWLKLLRRIWALGPRQIGPNILLTPNIKAEGTDNSVLVRGCSHVSDKLGFVPDSSDGNSVAETSSNASQALYKEAERLESSVVSGFELATAAGPLCDEPMWGLAFLVEAWISPLIEQNDESETHLQSEQYGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTECLGPMYAVLNRRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRKGTSGAASALLVLSHWEALPEDPFFVPRTEEEIEEFGDGSSVLPNTARKLINTVRRRKGLPVEEKVVQHGTKQRTCKRFDKTQRERRTFCVFTCNPHKIAASTT 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00107 1052 PANTHER - 8 1024 - -
Adu01g00107 1052 Gene3D - 885 1019 - -
Adu01g00107 1052 CDD aeEF2_snRNP_like_IV 608 893 - -
Adu01g00107 1052 Pfam Elongation factor G C-terminus 887 971 IPR000640 -
Adu01g00107 1052 Gene3D Translation factors 353 534 - -
Adu01g00107 1052 Gene3D - 632 883 IPR014721 -
Adu01g00107 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 351 IPR027417 -
Adu01g00107 1052 SUPERFAMILY Ribosomal protein S5 domain 2-like 611 888 IPR020568 -
Adu01g00107 1052 SUPERFAMILY EF-G C-terminal domain-like 535 609 IPR035647 -
Adu01g00107 1052 PRINTS GTP-binding elongation factor signature 128 137 IPR000795 GO:0003924|GO:0005525
Adu01g00107 1052 PRINTS GTP-binding elongation factor signature 15 28 IPR000795 GO:0003924|GO:0005525
Adu01g00107 1052 PRINTS GTP-binding elongation factor signature 92 103 IPR000795 GO:0003924|GO:0005525
Adu01g00107 1052 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 8 1024 - -
Adu01g00107 1052 Gene3D Elongation Factor G (Translational Gtpase), domain 3 537 612 - -
Adu01g00107 1052 SMART EFG_C_a 886 975 IPR000640 -
Adu01g00107 1052 CDD EF2 14 230 - -
Adu01g00107 1052 Gene3D - 5 216 IPR027417 -
Adu01g00107 1052 SUPERFAMILY Translation proteins 392 530 IPR009000 -
Adu01g00107 1052 CDD eEF2_snRNP_like_C 889 968 - -
Adu01g00107 1052 Gene3D Yeast translation eEF2 (G' domain) 222 336 - -
Adu01g00107 1052 CDD EF2_II 401 522 - -
Adu01g00107 1052 SUPERFAMILY EF-G C-terminal domain-like 889 988 IPR035647 -
Adu01g00107 1052 Pfam Elongation factor Tu domain 2 441 519 IPR004161 GO:0005525
Adu01g00107 1052 Pfam Elongation factor Tu GTP binding domain 12 244 IPR000795 GO:0003924|GO:0005525
Adu01g00107 1052 Pfam Elongation Factor G, domain III 537 604 IPR041095 -
Adu01g00107 1052 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 11 244 IPR000795 GO:0003924|GO:0005525
Adu01g00107 1052 CDD EF2_snRNP_III 537 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00107 Adu-Chr1 1527808 1532579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00107 8 1026 Eukaryotic Initiation Factors Gene Family AT3G22980 68.406 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00107 K14536 - pvu:PHAVU_003G003900g 1580.84