Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00101 ATGCGTGCTGCTTCCTTCTCAATATGGATTTCTGGCCACAATCGAGTCGTAGGAGGCGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAAGAGGTAGCAGCGGAAACCACCAGGACCAGGAACAGCAACACCAGCACCACAGTCAAAACACCGAAATTCCTCCTCCAGAGACCTTATTTTGGTACAAACAAAACGACGACGTTTCAACATACCGCGGTTTCGAGCTATGGAACCAGCATCAGCTTCAGCAGCAACAGCAGCAACATCACGTGATAGCACATCACCATCAAGCCCGCCCTCTCTTCCACCGAGATCTCTACTCGTCGGCTGTTGCCCTTGGCGTGGGGCCCAGCGGCGCGTCCGATGAGCAGTCTCCGTCGAGATCGGCGGTTATGGCGATGCGGTCCGCGGCGACCCACGTGAAGAGCACGTGGGTCCCAGCCGCTAAGCGCCGCGAGCGGCAACAGCAGTTAGCGGCGCTTCAGGATCACCAGAACAGAGATGCTTCAAAGAGACCTAGAGATGGCGGTAATAGCAACAACCCTTCCACTTCTTCAGCACTTGTTTGCACTACTCGTTTGGCCTCCACTGGGTTAGAGCTTGAGCAAGGAAATTTTCCATCAATAGTGAACTCTCCTGCAGAGTTCAGGTGCGTGAGGGTTAGTCCCTTGGATGATGTGAACGAACAGTACGCTTATCAAACCGCCGTCAACATCGGAGGCCATTTGTTCAAAGGGATTCTCTATGACTACGGTCCGGACAGCGAAAATGCTAGCTACTACGGCGGCGAGGGTTCTACTTCCGCCATTGCTGGAGGTCAGCCCTTGAACCTCATCACCGGCACTGATTCTGGCACCACCGCAACCGCAACCGCCCCGGGTGTGTCGTCTGCAGAGGCTCTTGATGTTGATCCTTCGTCGTTGTACAATCCAGCTCCAATTAACACATACATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCATCCAAGATCTTGA 1002 0.5439 MRAASFSIWISGHNRVVGGGGGGGGGGGGGRGSSGNHQDQEQQHQHHSQNTEIPPPETLFWYKQNDDVSTYRGFELWNQHQLQQQQQQHHVIAHHHQARPLFHRDLYSSAVALGVGPSGASDEQSPSRSAVMAMRSAATHVKSTWVPAAKRRERQQQLAALQDHQNRDASKRPRDGGNSNNPSTSSALVCTTRLASTGLELEQGNFPSIVNSPAEFRCVRVSPLDDVNEQYAYQTAVNIGGHLFKGILYDYGPDSENASYYGGEGSTSAIAGGQPLNLITGTDSGTTATATAPGVSSAEALDVDPSSLYNPAPINTYMAGSSGTQFFPHHPRS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00101 333 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 43 135 - -
Adu01g00101 333 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 138 329 - -
Adu01g00101 333 MobiDBLite consensus disorder prediction 14 57 - -
Adu01g00101 333 MobiDBLite consensus disorder prediction 116 135 - -
Adu01g00101 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 43 135 IPR007818 GO:0003700|GO:0006355
Adu01g00101 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 138 329 IPR007818 GO:0003700|GO:0006355
Adu01g00101 333 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 206 253 IPR006511 -
Adu01g00101 333 Pfam Domain of unknown function (DUF702) 137 254 - -
Adu01g00101 333 MobiDBLite consensus disorder prediction 142 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00101 Adu-Chr1 1425547 1427470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00101 45 333 C2H2 Transcription Factor Family AT3G51060 38.859 3.18e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Adu01g00101 DUF702 6.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00101 - - ahf:112720334 526.168