Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00092 ATGGCCCTTAAGGTCACCATGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACCATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATCTATCAGCTCAACCGTTCAATGAGCTCAAACAATCTAAACGACAGGTTAACATGGCAAAGTGCTTCTATTGCCAATCAACAAACATGCCAAAACGGTTTTCTTGATTCTAACCTTTCATCTCACTACCTAAACTACTTTCCATCCATTTCAACCAACTTATCCAACTTGCTCAGCAACTCTTTGGCCATTACCAATACATTAACGTCCTTCACTTCGTTACCAAAACACCCGGTTGCTCGCGGCGGTCGAAAATTGCTTTCTTTTAATGGCTTCCCAGAGTGGCTATCTCCTTCCGACAGGAGGCTTCTTCAGGATTTGCCGGGAACGGCGGCACCGAAGGCGGACATTGTGGTGGCACAGGACGGGAGTGGGAATTACAAGAGTGTTTCGGAGGGCGTGGCGGCGGCCGGTAGGGTGAATAAGAATGGTCGAGTGGTTGTGTACGTGAAAGCTGGCGTTTACCGAGAGAGTGTGAACATAAAGGGAGGTATAAAAAATTTGATGATGTTTGGGGATGGTATTGGAGCTACCATTATTACGGGTAGCAAGAATTATGAAGATGGCTCCACCACTGTTGGTTCAGCTACTTTTAGTAAGTACATACCTTATATTGATATGGTGGTGAAGAGTAGCCTGGACGGTTTGATTGAAGCGGCAGGGTGGATGCCATGGGCGGGAAGCTTTGCCTTGAATACATTGTATTATGGAGAGTATATGAATATTGGAGCTGGTGCTAACACTGCAGGGAGGGTTAAATGGCCTGGCTTTCATGTTATTACCAACCCTTCTGAGGCTTTGAAATTTACTGTTGCTAATTTCTTGGATGGTGGATCCTGGATTCCTGGCACTGGTGTTCCCTTTGAAACTGGCCTTTGA 1014 0.4556 MALKVTMDQAIVAHKLVSSTMESNHFKDKRAKSAWEDCLELYENTIYQLNRSMSSNNLNDRLTWQSASIANQQTCQNGFLDSNLSSHYLNYFPSISTNLSNLLSNSLAITNTLTSFTSLPKHPVARGGRKLLSFNGFPEWLSPSDRRLLQDLPGTAAPKADIVVAQDGSGNYKSVSEGVAAAGRVNKNGRVVVYVKAGVYRESVNIKGGIKNLMMFGDGIGATIITGSKNYEDGSTTVGSATFSKYIPYIDMVVKSSLDGLIEAAGWMPWAGSFALNTLYYGEYMNIGAGANTAGRVKWPGFHVITNPSEALKFTVANFLDGGSWIPGTGVPFETGL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00092 337 PANTHER PECTINESTERASE 249 336 - -
Adu01g00092 337 PANTHER PECTINESTERASE 2 244 - -
Adu01g00092 337 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 114 IPR035513 -
Adu01g00092 337 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 114 IPR035513 -
Adu01g00092 337 Gene3D - 251 337 IPR012334 -
Adu01g00092 337 SUPERFAMILY Pectin lyase-like 155 244 IPR011050 -
Adu01g00092 337 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 114 IPR006501 GO:0004857
Adu01g00092 337 Pfam Pectinesterase 252 322 IPR000070 GO:0030599|GO:0042545
Adu01g00092 337 Pfam Pectinesterase 161 244 IPR000070 GO:0030599|GO:0042545
Adu01g00092 337 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 249 336 - -
Adu01g00092 337 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 2 244 - -
Adu01g00092 337 Pfam Plant invertase/pectin methylesterase inhibitor 1 109 IPR006501 GO:0004857
Adu01g00092 337 SUPERFAMILY Pectin lyase-like 253 335 IPR011050 -
Adu01g00092 337 SMART PMEI_2 1 109 IPR006501 GO:0004857
Adu01g00092 337 CDD PMEI-like_3 1 85 - -
Adu01g00092 337 Gene3D - 155 250 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00092 Adu-Chr1 1294602 1295615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00092 252 337 Carbohydrate Esterase AT1G23200 62.791 7.55e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00092 - - aip:107646806 345.125