Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00075 ATGATGAATCATTGTTGCAGTAACAGCAACTCTCAGGATCACGTGATGGGCACGTGTAAATGCGGCATGCTCCCCACGCCCTATGGAGATGACTATTATTACGGTGACCCAAACAGGTACTCCTTTACACCTTCTTCGTCGTCTTTGTCTTGGTCGTCGGTGGACTGTACCCTCTCCCTGGGGACACCGTCCACGCGATTCTCCGAAGACGAAGACAGGCGAACACGTCATCATCATGAACGTCGCTCCAAACAGAATCCTCATCATTCTGAGGCTAAAGCCAGCAAGGAATCCGACGGTGATGCTTTCTTTTCTCGCCGCTGTGCCAACTGTGATACCACTTCCACACCTCTATGGAGGAACGGTCCTCGGGGACCCAAGACACTATGCAATGCATGCGGGATTAGATACAAGAAAGAAGAGAGAAGAGCCAGCGCTACTGCAGCCGCCACCACAACCACCGTTACTAACAGCGGCGGCGAAATGGAGCCGGTTACGGCTCACATGTACGGCCACAACAATAACAATTCGTGGTACTATACAAACTCTCAAGGCAATAATAATGGCGAGTTACGTTTCATGGATTATGATGCCAATGATGACATGGACCCATTCCCTTCTTGGAGACTCAACAATGCAGACAGAACAAATCTTGTTCACGACTTTACAAGATGA 675 0.4948 MMNHCCSNSNSQDHVMGTCKCGMLPTPYGDDYYYGDPNRYSFTPSSSSLSWSSVDCTLSLGTPSTRFSEDEDRRTRHHHERRSKQNPHHSEAKASKESDGDAFFSRRCANCDTTSTPLWRNGPRGPKTLCNACGIRYKKEERRASATAAATTTTVTNSGGEMEPVTAHMYGHNNNNSWYYTNSQGNNNGELRFMDYDANDDMDPFPSWRLNNADRTNLVHDFTR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00075 224 CDD ZnF_GATA 107 139 IPR000679 GO:0006355|GO:0043565
Adu01g00075 224 SMART GATA_3 102 154 IPR000679 GO:0006355|GO:0043565
Adu01g00075 224 MobiDBLite consensus disorder prediction 63 99 - -
Adu01g00075 224 Pfam GATA zinc finger 108 142 IPR000679 GO:0006355|GO:0043565
Adu01g00075 224 MobiDBLite consensus disorder prediction 85 99 - -
Adu01g00075 224 ProSiteProfiles GATA-type zinc finger domain profile. 105 138 IPR000679 GO:0006355|GO:0043565
Adu01g00075 224 ProSitePatterns GATA-type zinc finger domain. 108 133 IPR000679 GO:0006355|GO:0043565
Adu01g00075 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 146 - -
Adu01g00075 224 PANTHER GATA TRANSCRIPTION FACTOR 18 89 221 IPR044272 GO:0003700|GO:0009908
Adu01g00075 224 PANTHER GATA TRANSCRIPTION FACTOR 18 17 87 IPR044272 GO:0003700|GO:0009908
Adu01g00075 224 Gene3D - 104 169 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00075 Adu-Chr1 1136354 1138419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00075 50 224 C2C2-Gata Transcription Factor Family AT3G50870 41.667 1.49e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Adu01g00075 GATA 9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00075 - - gmx:100799154 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00075 01 1136354 1138419 Adu01g00075 01 1136354 1138419 ECH
Adu05g00810 05 9798063 9799411 Adu01g00075 01 1136354 1138419 PCT
Adu01g00075 01 1136354 1138419 Adu05g00376 05 3908019 3915874 PCT