Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00060 ATGGCCCTTAAGGTCACCATGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACCATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATCTATCAGCTCAACCGTTCAATGAGCTCAAACAATCTAAACGACAGGTTAACATGGCAAAGTGCTTCTATTGCCAATCAACAAACATGCCAAAACGGTTTTCTTGATTCTAACCTTTCATCTCACTACCTAAACTACTTTCCATCCATTTCAACCAACTTATCCAACTTGCTCAGCAACTCTTTGGCCATTACCAATACATTAACGTCCTTCACTTCGTTACCAAAACACCCGGTTGCTCGCGGCGGTCGAAAATTGCTTTCTTTTAATGGCTTCCCAGAGTGGCTATCTCCTTCCGACAGGAGGCTTCTTCAGGATTTGCCGGGAACGGCGGCACCGAAGGCGGACATTGTGGTGGCACAGGACGGGAGTGGGAATTACAAGAGTGTTTCGGAGGGCGTGGTAATAAGGGAAACGGTGTCAAGTGATGGGTTCATCGCCAGGGACTTAACAATTGAGAACAGTGCTGGGCCACAGAAGCACCAAGCGGTGGCACTTCTTTCCAGCTCCGATCACTCCGTCTTCTACCGCTGTAGCTTCAGAGGCTACCAAGACACCTTATACGTCCTTTCCCAACGCCAATTCTACCGCGACTGCGACATCTACGGCACCATTGACTTCATCTTCGGTGACGCCGTCGCCCTCTTCCAAAACTGCAACATCTTCTTGAGAAAACCAATGACTAAGCAACAGAACGCAGTCACAGCACAAGGGAGAACCGATCCCAACGAGAACACCGGCATTGTCATCCACAACTGCCGCATCATGGCGGCTTCAGATCTGAAGCCAGTTCAGGGATCTGTGAAGTGCTTCCTCGGGCGGCCGTGGCAGAAGTACTCAAGAACGGTGGTGGTGAAGAGTAGCCTGGACGGTTTGATTGAAGCGGCAGGGTGGATGCCATGGGCGGGAAGCTTTGCCTTGAATACATTGTATTATGGAGAGTATATGAATATTGGAGCTGGTGCTAACACTGCAGGGAGGGTTAAATGGCCTGGCTTTCATGTTATTACCAACCCTTCTGAGGCTTTGAAATTTACTGTTGCTAATTTCTTGGATGGTGGATCCTGGATTCCTGGCACTGGTGTTCCCTTTGAAACTGGCCTTTGA 1242 0.4863 MALKVTMDQAIVAHKLVSSTMESNHFKDKRAKSAWEDCLELYENTIYQLNRSMSSNNLNDRLTWQSASIANQQTCQNGFLDSNLSSHYLNYFPSISTNLSNLLSNSLAITNTLTSFTSLPKHPVARGGRKLLSFNGFPEWLSPSDRRLLQDLPGTAAPKADIVVAQDGSGNYKSVSEGVVIRETVSSDGFIARDLTIENSAGPQKHQAVALLSSSDHSVFYRCSFRGYQDTLYVLSQRQFYRDCDIYGTIDFIFGDAVALFQNCNIFLRKPMTKQQNAVTAQGRTDPNENTGIVIHNCRIMAASDLKPVQGSVKCFLGRPWQKYSRTVVVKSSLDGLIEAAGWMPWAGSFALNTLYYGEYMNIGAGANTAGRVKWPGFHVITNPSEALKFTVANFLDGGSWIPGTGVPFETGL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00060 413 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 184 412 - -
Adu01g00060 413 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 114 IPR006501 GO:0004857
Adu01g00060 413 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 114 IPR035513 -
Adu01g00060 413 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 2 180 - -
Adu01g00060 413 SUPERFAMILY Pectin lyase-like 155 411 IPR011050 -
Adu01g00060 413 Pfam Pectinesterase 185 398 IPR000070 GO:0030599|GO:0042545
Adu01g00060 413 Gene3D - 181 413 IPR012334 -
Adu01g00060 413 Pfam Plant invertase/pectin methylesterase inhibitor 1 109 IPR006501 GO:0004857
Adu01g00060 413 ProSitePatterns Pectinesterase signature 2. 246 255 IPR033131 -
Adu01g00060 413 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 114 IPR035513 -
Adu01g00060 413 SMART PMEI_2 1 109 IPR006501 GO:0004857
Adu01g00060 413 CDD PMEI-like_3 1 85 - -
Adu01g00060 413 PANTHER PECTINESTERASE 184 412 - -
Adu01g00060 413 PANTHER PECTINESTERASE 2 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00060 Adu-Chr1 975828 977443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00060 1 413 Carbohydrate Esterase AT1G23200 47.581 1.16e-142 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00060 - - aip:107646806 776.548