Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00057 ATGGGTTGGTTTACCAAGTTGCTTAAGGGATCCAACCATAAATCTTCGAGAGGAAAATATCATGGGAAACATGATAATTCCATGGATGATTTGACAGATGTTGAGAGAGAAGAAATTGATCGTGCAATTGCGCTCTCTCTTTCGGAGGAAGATCCGAAAGGGAAAAAAGTAATTGATGAATATCATGGTGAAGTTGAACAACATGAAGAATTAAGTAATCATCACAAAGAGGAAGATGAATCTGTTGGTGAAGTTGAGGAAGAGGAAGATGACCATCTTAATAACATTCAACAGGATAATGACAAGCATCTTGCAGAAGCGCAGCTTGAGGAAGATGAACAACTTGCCAGAGCACTTCAAGAAAGTTTGAACATTGATTCAGACAGAGCTGAAAGAGATTCTTTATTTCAACCATTTCCACACCTCCTTCGACCTGTATACAGAACCTGTGCTGGCTGCAATTCAGAGATTGGCCATGGCAGATTTTTGAGTTGCATGGGAGGTGTCTGGCATCCAGAATGTTTCTGTTGCCATGCTTGTAATTTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGTCGTTACCATAAATCTTGCTACAAGGAGCTGCATCACCCAAGATGTGATGTTTGCAAGAACTTCATCCCACCAAATTCAGCTGGACTCATTGAGTATAGAGCACATCCTTTCTGGATGCAGAAATACTGTCCTTCACATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGTCAAGGGATACAAAGTATCTTTTGCTCGATGACGGTCGAAAGTTGTGCCTAGAGTGTCTAGACTCGGCTATTATGGATACGCATGAATGCCAGCCTCTCTATCTTGAAATACAAGAATTCTATGAAGGTTTAAATATGAAAATAGAACAGCAAGTTCCAATGCTTTTAGTTGAGAGACAAGCACTCAACGAGGCCATGGAGGGAGAAAAGAATATTTTAAGGAGACCAAGGATAGGGGCAGGATACCGAGTCATAGATATGATAACTGAGCCTTACAGGCTAATCCGCCATTGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACGGGTTCAATCCTGGCCCATGAGATGATGCATGCTTGGCTTAGGCTTAAAGGCTATGGCAATTTAAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTGCTAGCTCACATGTGGCTAGATTCAGAGATCTATGCTGGTTCAGGAAGTGATAGTGCATCATCGTCCTCGGCCTCATCCTCATCCTCATCCTCGCCTTCCTCTTCTACATCATCAAAGAAGGGTAAACGGTCTGACTTCGAGAAGAAACTTGGCGAGTTTTTCAAACACCAGATTGAGTCCGATCGCTCATCGGCTTATGGAGATGGATTCAGAGAGGGGAACCAAGCTGTGCTCAAGTATGGTTTAAGAAGTACCCTTGATCATATTCGACTAACCGGAAGTTTTCCATACTGA 1500 0.4273 MGWFTKLLKGSNHKSSRGKYHGKHDNSMDDLTDVEREEIDRAIALSLSEEDPKGKKVIDEYHGEVEQHEELSNHHKEEDESVGEVEEEEDDHLNNIQQDNDKHLAEAQLEEDEQLARALQESLNIDSDRAERDSLFQPFPHLLRPVYRTCAGCNSEIGHGRFLSCMGGVWHPECFCCHACNLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWMQKYCPSHERDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQVPMLLVERQALNEAMEGEKNILRRPRIGAGYRVIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYAGSGSDSASSSSASSSSSSSPSSSTSSKKGKRSDFEKKLGEFFKHQIESDRSSAYGDGFREGNQAVLKYGLRSTLDHIRLTGSFPY 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00057 499 Pfam Protein DA1 327 494 IPR022087 -
Adu01g00057 499 Gene3D Cysteine Rich Protein 146 207 - -
Adu01g00057 499 ProSiteProfiles LIM domain profile. 148 208 IPR001781 -
Adu01g00057 499 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 177 235 - -
Adu01g00057 499 SMART lim_4 149 201 IPR001781 -
Adu01g00057 499 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 146 175 - -
Adu01g00057 499 CDD LIM_DA1 150 202 - -
Adu01g00057 499 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 327 - -
Adu01g00057 499 MobiDBLite consensus disorder prediction 419 441 - -
Adu01g00057 499 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 328 499 - -
Adu01g00057 499 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 110 129 IPR003903 -
Adu01g00057 499 MobiDBLite consensus disorder prediction 1 31 - -
Adu01g00057 499 MobiDBLite consensus disorder prediction 61 81 - -
Adu01g00057 499 Coils Coil 93 122 - -
Adu01g00057 499 MobiDBLite consensus disorder prediction 61 91 - -
Adu01g00057 499 Pfam LIM domain 150 204 IPR001781 -
Adu01g00057 499 Coils Coil 58 78 - -
Adu01g00057 499 SMART uim 110 129 IPR003903 -
Adu01g00057 499 SMART uim 34 53 IPR003903 -
Adu01g00057 499 ProSitePatterns LIM zinc-binding domain signature. 150 184 IPR001781 -
Adu01g00057 499 MobiDBLite consensus disorder prediction 419 445 - -
Adu01g00057 499 PANTHER PROTEIN DA1-RELATED 2 328 499 IPR045218 -
Adu01g00057 499 PANTHER PROTEIN DA1-RELATED 2 1 327 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00057 Adu-Chr1 919306 924229 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Adu01g00057 DA1-like 1.3e-77 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00057 - - gmx:100806605 794.653