Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00013 ATGTCATCGACGAATTCGCCATGCGCGGCCTGCAAGTTCCTTCGTCGGAAGTGCACACAAGAGTGCATTTTCGCACCATATTTCCCGCCGGACAACCCACAGCGCTTCGCAAGCGTCCATCGCGTCTTCGGCGCCAGCAACATCGGCAAGATCCTCAACGATCTTAGCCCCTGCCAGCGGGAAGATGCGGTGACGTCCCTTGCGTTCGAGGCGGAGGCGCGCCTCGACAGCCCAGTGTACGGGTGCGTCAGACACATCGTCATCCTCCAACAGCGCCTGCACCAAATACAAATGGACCTCCTCCACGCCAAGAGCGAACTCAGCGCCTACATCAACCCACAAGGCATTCAGGGTCCGTTCTCCCCTCATGGAATTCGAGGGCTACCACTTTACCCTCAAGGAAAGCCGCCGTCTTCGTCTGCGGCTCTTTTCGGCCCGCCTTACGGCCCAAATGTTATTCAGTCTTTGATGCCACCATCTTCTGTGCAGCATAATGGAACAATGAATGCTAATGCCGACCTGGATCCAGAGCAGCGCGAGTTGTTGGGGGCAGCACAGCAACATGACATGATGGTCAGAAACTATGAACAGCAGCAGCAGCAGCAGCAGCAGGAGTATCTAAGATACAATGCTGCTACTGGGGTTATTGAACCTGTGGCAGCTGCAAGTCCGGTTTCAGTTGTCACAGCCGACGGTGATGGCCGTGGAAATGGAGTTTTTGCCCAGATGGCTGCACATTCAGGCGGTCAAGGAGGTGAGCTGACACCTTGTTTGGGTTTGGGGACATTTGACAGTGGTGGAACTTATCACCATCAGTTGCAACAAGAACCACCACAACATGGAGGAGTAGGGGAAAATTATGTTGGTCTTGCAAATCGTCATCACTATCCTGTTGAGGCGCAATTCCTGCTCCCATCACAACAACAACAGTCAGAGAGTGAGGACTTTGTGGCTTTTGCTTATAATAATAAACAGGCGAGAGAGCAAGAAGTAGTTGAGGAAGCTGGTGGCTACTGGAAAGTTGCAACGGACGTGGAAATGTACTACAATAACCACTTCCTTATGCAGCATGATCTCCTTAGAGAGCTAGCAAACCATCAAAGCAACCAAGAATCGATCGAGCGAAGGAAAAGGCTGGTGATCGACTTGACTCAGAATGGGAAAAATTGTCCCAACTGGTTGGTAGGCCAGAATCAGCCGGGTATCGTTTCTCGCATGCTGTCATTCTTATCTGTAAGGGGGACACAACAACAACAGAAGCAGGAACAAGTCACTGCTCGCATAATGTTTGTTTCAACTGATGAAACATTCACTCCTGACTGGTACAACATGAACCATGATGAAACTGAAGTTCTGATTTTAAATATCCATTCAAACAAGTATACATTTCCGGATTTCATTCAGAAAATGAGAAAACTCAAAGTTCTCATAGTCACAAATCAGGGTTTCCATCCTTGTGAATTGAACAACTTTGAGGAAGGACTTGAGGAGTTAAAGTTTTCGACCATAGCTTATCAAGGGCTTCTGGGTTTTCGATTTGAGGCTGGAGAGAGAATGGAGCGCTTAGAACAAGGACAGGAAGACTTAGACATAAAAATAGAATACCCTAGAAGATACTCCTGA 1623 0.488 MSSTNSPCAACKFLRRKCTQECIFAPYFPPDNPQRFASVHRVFGASNIGKILNDLSPCQREDAVTSLAFEAEARLDSPVYGCVRHIVILQQRLHQIQMDLLHAKSELSAYINPQGIQGPFSPHGIRGLPLYPQGKPPSSSAALFGPPYGPNVIQSLMPPSSVQHNGTMNANADLDPEQRELLGAAQQHDMMVRNYEQQQQQQQQEYLRYNAATGVIEPVAAASPVSVVTADGDGRGNGVFAQMAAHSGGQGGELTPCLGLGTFDSGGTYHHQLQQEPPQHGGVGENYVGLANRHHYPVEAQFLLPSQQQQSESEDFVAFAYNNKQAREQEVVEEAGGYWKVATDVEMYYNNHFLMQHDLLRELANHQSNQESIERRKRLVIDLTQNGKNCPNWLVGQNQPGIVSRMLSFLSVRGTQQQQKQEQVTARIMFVSTDETFTPDWYNMNHDETEVLILNIHSNKYTFPDFIQKMRKLKVLIVTNQGFHPCELNNFEEGLEELKFSTIAYQGLLGFRFEAGERMERLEQGQEDLDIKIEYPRRYS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00013 540 Coils Coil 185 212 - -
Adu01g00013 540 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 223 - -
Adu01g00013 540 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Adu01g00013 540 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Adu01g00013 540 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00013 Adu-Chr1 351257 359639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00013 1 210 AS2 family AT5G66870 48.402 1.58e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Adu01g00013 LOB 2.6e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00013 01 351257 359639 Adu01g00013 01 351257 359639 ECH
Adu05g00702 05 8296648 8298839 Adu01g00013 01 351257 359639 PCT