Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g02193 ATGGGCAAATCCAGCAAGAAATCAGCTCCTAAAGTTGATTCTGCTCCGGCTGTTGTTCCGCCTTCGATGTCTGCAAAGAAAGGCAAGAGGGAAGCTGAGGATGAACTTGAGAAGCTAGTGAGTGCAAAGAGGCAGAAGAGAGATGAAGTTGCTGATAAGAAGGCGGCCAAGGTGCAGAAAAAGAAGAAAGGAAGTAGTTCAGATGATGATTCTTCATCAGAATCTGAGGAAGACAAGAAAACTGTCACAAAAGCTGTTCTTCCATCAAAGACACAACCTTCTAAGAACGGTGCCCTAAGTGGCCGGGTGAACAGAGGCAAACCAGCTAGTAGCTCCACTTCTGAATCCTCTGATGATGACTCCGATAGTGATGATGCTGGAAAATCCAAGGTTGCCTATGCTGCTGGTAAGAATGGAACTCCTTCAACAAAGAAGAAAGTTGAGTCAAGTGACAGCTCAGATACTGAGGGCAGTTCAGATGAAGAAAATGATGTGAGAACTAAAGTTGCCCCGCTATCCAAGAAGATACCTGTTGCTGAAGCTAAGAAAGTTGAATCAGACTCAGAACCTGACAGCAGCTCTGATGCGGATGATGTCCCTACAAAATCATTCAAGAAGTTGCCTGCTGCTCCTGCCGCAGGCAAAAGTAAACCTGTCAAAAAACTTGAGTCTAGTGATGATGCAGCCTCTGATAGTAGCTCAGATGAAGATGATGATCTTGCAACAAAGAAGTTGCCTGCAACAGTTCCTTCAAAGAAGAAAGTTGAGAGCACTGAAAGCTCTGAAGATGAATCAAGTGAAAGCTCTGATGAAGATAATGGTATGAAGTCTTCTGTCAAAGCAGTTTCCAAGCCTTCCATTGTTTCAAAAAAGGTTGAATCAAGTGAGAGCTCAGAATCTGATAGCAGTAGCTCTGATGAAGACGATGAAGACAACAAAAATGAAAAGGGAGTCCACAGTGCTTCCAGTATGAAGCCAGTAAAGGCTTCTGAGAAGAATTCGAAGTTAAAGGATAGTTCTGACGTGACTGATTCTGATGATGAGGAGGAATCCTCCGACAGTGATTCTGAGGATGAGAAGGAAACTGCTCCTAAGGCTAACGCTAAAGCTGCAGCTGCTTTGAAGACAGCTAAAGAGGAGTCTGGTGAAAGTTCATCTGAAGATGACTCTTCGGAAGATGAGAAAGCTGCTCCCCAGTCTAATATTAAGGCGTCTGCTGGTGTGTGGACCGCAAAAAAGAAGTCTAGTGAATCTTCATCTGAAGATGACTCTTCCGAAGATGAGGATAAGATGGATGTTGACGAGGACAGTGGTTCTGAAGAAAGTGAGGAGGAGCCGCAAAAGAAGTCTGTAAAAGCTATTAAGGAAAGCAGTGAAAGTTCAGAGAGCTCAGATGATAGCGAGGATGACAATGAGACACCCGCCAAGACTCAGAAAAATGCTAAGGATGTGGAGATGGTTGATGCAGCATCAGCAAAGTCAAATGGAAAGAAAGCTCCTAGCACCCCAGCTACTCCAAAAGCACAGAATGCCACGTCAAAGACTCTGTTTGTTGGAAATTTGTCATATAAAGTAGAACAGACTGATGTGGAAAACTTCTTTAAAGATTGTGAAGTGGTTGAGGTCCGTATAGCCTCAGATGAAAATGGCAGGTCTAGAGGCTTTGGACATGTTGAATTTGCCACAGAGGAAGCAGCACAAAAAGCCCTTCAGTTGAATGGGAAAGAATTGCTTCAGCGTCCTGTGAAACTTGATTTCGCTCGTGAAAAGGGAGCATATACCCCCAATAGCGGCAACTGGAGCAATTCATTCCAGAAAGGAGGACAGGCTCAATCTCATACATTATTTGTTAAGGGTTTTGATACATCCCTGGGGGAAGATGAGGTTAGAACAAGCCTGAAAGAGCATTTCAGTTGTGGAGAGATTACAAGGATATCAATTCCTACAGATCATGAGACTGGTGCTTTCAGGGGGTATGCCTACATGGATTTCAAGGATGTTAATGACCTTAACAGAGCTCTAGAATTGAATGGAAGTGAGCTTGGAGATGGATATTATTTGACTGTTGATGAGGCAAGACCTCGAGCTGATAATCAAGGTGCGAGTGGTGGTGGCAGTGGTGAATTTGGGGGAAGAGGTGGCAGAGGTGGTCGTGGAAGAGGTGGCGGCGGCAGGGGACGTGGCACACCCTATAAACCAAGTCTTGCTGCTGCAGGCACAGGGACAAAGACCACATTTGCAGATGAAGATTAA 2253 0.4465 MGKSSKKSAPKVDSAPAVVPPSMSAKKGKREAEDELEKLVSAKRQKRDEVADKKAAKVQKKKKGSSSDDDSSSESEEDKKTVTKAVLPSKTQPSKNGALSGRVNRGKPASSSTSESSDDDSDSDDAGKSKVAYAAGKNGTPSTKKKVESSDSSDTEGSSDEENDVRTKVAPLSKKIPVAEAKKVESDSEPDSSSDADDVPTKSFKKLPAAPAAGKSKPVKKLESSDDAASDSSSDEDDDLATKKLPATVPSKKKVESTESSEDESSESSDEDNGMKSSVKAVSKPSIVSKKVESSESSESDSSSSDEDDEDNKNEKGVHSASSMKPVKASEKNSKLKDSSDVTDSDDEEESSDSDSEDEKETAPKANAKAAAALKTAKEESGESSSEDDSSEDEKAAPQSNIKASAGVWTAKKKSSESSSEDDSSEDEDKMDVDEDSGSEESEEEPQKKSVKAIKESSESSESSDDSEDDNETPAKTQKNAKDVEMVDAASAKSNGKKAPSTPATPKAQNATSKTLFVGNLSYKVEQTDVENFFKDCEVVEVRIASDENGRSRGFGHVEFATEEAAQKALQLNGKELLQRPVKLDFAREKGAYTPNSGNWSNSFQKGGQAQSHTLFVKGFDTSLGEDEVRTSLKEHFSCGEITRISIPTDHETGAFRGYAYMDFKDVNDLNRALELNGSELGDGYYLTVDEARPRADNQGASGGGSGEFGGRGGRGGRGRGGGGRGRGTPYKPSLAAAGTGTKTTFADED 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g02193 750 Gene3D - 599 729 IPR012677 -
Accr9g02193 750 MobiDBLite consensus disorder prediction 147 169 - -
Accr9g02193 750 MobiDBLite consensus disorder prediction 85 116 - -
Accr9g02193 750 MobiDBLite consensus disorder prediction 343 357 - -
Accr9g02193 750 MobiDBLite consensus disorder prediction 421 441 - -
Accr9g02193 750 MobiDBLite consensus disorder prediction 694 750 - -
Accr9g02193 750 SUPERFAMILY RNA-binding domain, RBD 503 604 IPR035979 GO:0003676
Accr9g02193 750 MobiDBLite consensus disorder prediction 26 84 - -
Accr9g02193 750 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 582 IPR000504 GO:0003723
Accr9g02193 750 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 615 683 IPR000504 GO:0003723
Accr9g02193 750 MobiDBLite consensus disorder prediction 178 202 - -
Accr9g02193 750 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 514 589 IPR000504 GO:0003723
Accr9g02193 750 Gene3D - 502 594 IPR012677 -
Accr9g02193 750 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 613 694 IPR000504 GO:0003723
Accr9g02193 750 Coils Coil 25 49 - -
Accr9g02193 750 MobiDBLite consensus disorder prediction 275 293 - -
Accr9g02193 750 FunFam Nucleolin 2 598 733 - -
Accr9g02193 750 SMART rrm1_1 515 585 IPR000504 GO:0003723
Accr9g02193 750 SMART rrm1_1 614 690 IPR000504 GO:0003723
Accr9g02193 750 SUPERFAMILY RNA-binding domain, RBD 605 726 IPR035979 GO:0003676
Accr9g02193 750 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 613 731 - -
Accr9g02193 750 MobiDBLite consensus disorder prediction 495 510 - -
Accr9g02193 750 MobiDBLite consensus disorder prediction 1 510 - -
Accr9g02193 750 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g02193 Accr-Chr9 46919127 46927163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g02193 515 683 Eukaryotic Initiation Factors Gene Family AT2G23350 30.286 5.42e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g02193 K11294 - nnu:104592315 423.705