Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g02158 ATGCTATCTGATATGGCGGCATCTTCGTCGTCGGCGTCGCTGTTCGGAATCAGAGGAGATCAGAATCCGATGAATCAGCAGCAGCATTCATCAACTACACCAACTTCATCAACAAACGCAGCTGCACCACCCCAGAAGAAGAAGAGAAACCAACCAGGAACACCAAATCCAGATGCAGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTTCAAAGAGAGCAAAACCTGCAACTTCACAGAAGAGGACACAACCTACCATGGAAACTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTCCACCATGACCCATCTAGAGCTCTCGGTGACCTCACCGGCATTAAGAAACACTACTCGAGAAAACACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACCAGAGAATACAGGTGTGACTGTGGCACTCTCTTCTCCAGGCGAGACAGTTTTATCACCCACAGGGCGTTTTGTGATGCACTGGCTCAAGAAAGTGCAAGACAACCTTCCAACTTGATTAATGGGGGCCAGCTCTATGGAAGTGACAACATGGCTTTAGGCTTATCTCAGGTGGCCTCCCACCTCTCCACCGCCGTCCATGACCACCACCCCAACAACCAACCTGGCACTGACATTTTGCGGGCAGCCGTGGCTGCTCGGGCAGGCCATTTCGACCACCTTCTTCCACCATCCTTAATTAGACCACCACCAGCGCAAATGGTGGCCAATGTTGCTTCTCCTCCCACCTTCTTCATGGCGGAGCAATCGAACCAGAACTATCACCGCCATGATCATCATCACCAGCAAAACAAGCACCAATTCCATGGACTCATGCAATTCTCTGATCTTCATCATCACAACAATAGTAACAATTCTACAACATCTGCACCTAATAATGGTGCCACCCTCTTCAACCTTCCTCCATTTCTCTCCAGCACCACCAACAATAACAGTTCTTTATCTGAAGCCGCCGGAGGAGGAGGACACGTGGAAGGTGGCCCCAACAACAACTTCTTCTCCGACCAGATCACGAGCTCAAGTGCTCCTTCTCTTTTCAGCACATCTCTACAAAACAACAGCAACAGCAGCCTTATCCCTCACATGTCTGCAACAGCATTGCTTCAAAAGGCCGCTCAAATCGGTGCGAGTTCCAGCAACAACAGCACCACAGCCTCGCTTCTCAGAAGCTTCGGGAGCTCGTCCTCCAGTACCACCGGATCCAAGTCTGATCACCACCACCTCCACAACAACAACATCAGGCCGCCGCCGCCACCACAGCAGCTGGTCGGACCAAACTATGGCGCTATTTTCGGAGGGCCGTCGTCGTCGACGACCAACAACGATGATCAGAACAGCGATCTTCAAGACTTGATGAACACATTCACTTCTGTTGGTGGGTATGAAGGATACGATCATCATCATCATCAGCATCAACAAAACAACTCATCAAACACAAGAGATCTGAAACTACCCGTAGGATCTGACAGGCTAACTCGAGATTTTCTTGGTGTTGGACAAATTGTGAGAAGCATGAGTGGAGGAATATCACCCAGAGATCATCAGCAGCAGCAGCAACAAGGGTTCATGAACTTGGGTTCCATGGAGACTCATCATCACAGAAATGGTAATAATAACAATGCTGCGCCGTCAGGCCCATCTTTTGGAGGCGGCGGAGGGAATTTTCAGTGA 1812 0.4912 MLSDMAASSSSASLFGIRGDQNPMNQQQHSSTTPTSSTNAAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSNLINGGQLYGSDNMALGLSQVASHLSTAVHDHHPNNQPGTDILRAAVAARAGHFDHLLPPSLIRPPPAQMVANVASPPTFFMAEQSNQNYHRHDHHHQQNKHQFHGLMQFSDLHHHNNSNNSTTSAPNNGATLFNLPPFLSSTTNNNSSLSEAAGGGGHVEGGPNNNFFSDQITSSSAPSLFSTSLQNNSNSSLIPHMSATALLQKAAQIGASSSNNSTTASLLRSFGSSSSSTTGSKSDHHHLHNNNIRPPPPPQQLVGPNYGAIFGGPSSSTTNNDDQNSDLQDLMNTFTSVGGYEGYDHHHHQHQQNNSSNTRDLKLPVGSDRLTRDFLGVGQIVRSMSGGISPRDHQQQQQQGFMNLGSMETHHHRNGNNNNAAPSGPSFGGGGGNFQ 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g02158 603 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 562 IPR031140 -
Accr9g02158 603 MobiDBLite consensus disorder prediction 1 52 - -
Accr9g02158 603 MobiDBLite consensus disorder prediction 323 364 - -
Accr9g02158 603 MobiDBLite consensus disorder prediction 575 603 - -
Accr9g02158 603 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Accr9g02158 603 Gene3D Classic Zinc Finger 54 123 - -
Accr9g02158 603 MobiDBLite consensus disorder prediction 323 383 - -
Accr9g02158 603 MobiDBLite consensus disorder prediction 478 503 - -
Accr9g02158 603 SMART c2h2final6 116 146 IPR013087 -
Accr9g02158 603 SMART c2h2final6 75 97 IPR013087 -
Accr9g02158 603 SMART c2h2final6 151 171 IPR013087 -
Accr9g02158 603 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Accr9g02158 603 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Accr9g02158 603 MobiDBLite consensus disorder prediction 575 592 - -
Accr9g02158 603 FunFam protein indeterminate-domain 12-like 54 122 - -
Accr9g02158 603 Gene3D Classic Zinc Finger 129 208 - -
Accr9g02158 603 MobiDBLite consensus disorder prediction 425 530 - -
Accr9g02158 603 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Accr9g02158 603 MobiDBLite consensus disorder prediction 425 448 - -
Accr9g02158 603 MobiDBLite consensus disorder prediction 1 60 - -
Accr9g02158 603 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g02158 Accr-Chr9 46344070 46347532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g02158 45 554 IDZ Gene Family AT2G02070 48.193 2.49e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr9g02158 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g02158 K25870 - gmx:100799389 535.028