Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g02115 ATGTCTTTGATAATGAGTCCCATTCTGTTGGCAGACCAGTTATTGAGAATGGCAGAAGACGCTGAAGGAGTGACTTTTAAGGATCTGGGATTAGCTGATCAACTAGTGGACGCTTGTGAAAAGTTGGGTTGGACAACACCATTAAAGATTCAAGCTGAAGCAATTCCTCTTGCATTGGAAGGAAAAGATGTTATTGGGCTTGCACAAACTGGCTCTGGGAAGACTGGTGCTTTTGCTCTTCCAATACTGCATGCCCTTCTAGAAGCACCACGACCAAAACACTTTTTTTCTCTCGTGTTGTCTCCCACAAGGGAGCTTGCTATTCAAATCTCTGAACAGTTTGAAGCATTAGGTGCTGAAATTGGTGTCAAGTGTGCTGTGCTAGTTGGAGGGATTGACATGGTGCCACAGGCAGTCAAGATAGGAAAGCAGCCTCATATTATTGTTGGGACACCTGGTCGTGTTTTAGATCACCTGAAAAACACTAAAGGTTTTATTCTCAACGGATTAAAATATTTAGTCCTAGATGAGGCTGACAGGCTGTTGAATGAGGATTTTGAGCAATCTCTCCATGAGATTCTGGAAGCTATCCCTCGACAGAGAAGAACATTTCTGTTTTCTTCTACGATGACTAAGAAGGTCGAAAAACTCCAAAGGGTTCATTTAAGGAATCCTGTGAAGATTGAAGCAGCATCTAAATATTCTACTGTTGACACTTTGAAGCAGCAGTTTCGCTTTTTGCCTGCTAAGCACAAGGATTGCTACGTGGTATATATTCTGAATGAAATGGCTGGAAGTACGTCCATGGTGTTTACCCGCACATGTGATTCAACCCAGCTCCTGGCTTTAACTCTCAGAAATTTGGGCTTCAAAGCCATCCCCATTAATGGCCATATGTCCCAGTCAAAGAGACTCGGAGCCTTGAATAAGTTCAAGTCTGGAGATTGCAATATCCTTCTTTGTACTGATGTTGCAAGTAGAGGTCTGGACATCCCCACCGTCGATATGGTTATCAACTATGATATCCCCACAAACTCAAAGGATTATATACATCGTGTGGGAAGAACTGCTCGGGCAGGGGGATCTGGCATTGCCATTTCCCTCGTGAATCAATATGAGCTGGAGTGGTACCTTCAGATAGAGAAGCTTATAAAAAAGAAGTTACCAGAGTATCCTGCGCAGGAAGAGGAGGTTCTGCTTCTGGAAGAGCGAGTCAGTGAGGCCAAAAGATTATCAGCAATGAAATTGAAGGAGAACGGAGGGAAGAGGAGAAGGAATGGTGAAGGAGACATTGAAGGGGAATATATTGAGAAATACTTGGGACTCAAGGATGGAAAATCATCCAAAAAGTTCAGAAGGAAATGA 1365 0.4322 MSLIMSPILLADQLLRMAEDAEGVTFKDLGLADQLVDACEKLGWTTPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPKHFFSLVLSPTRELAIQISEQFEALGAEIGVKCAVLVGGIDMVPQAVKIGKQPHIIVGTPGRVLDHLKNTKGFILNGLKYLVLDEADRLLNEDFEQSLHEILEAIPRQRRTFLFSSTMTKKVEKLQRVHLRNPVKIEAASKYSTVDTLKQQFRFLPAKHKDCYVVYILNEMAGSTSMVFTRTCDSTQLLALTLRNLGFKAIPINGHMSQSKRLGALNKFKSGDCNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGGSGIAISLVNQYELEWYLQIEKLIKKKLPEYPAQEEEVLLLEERVSEAKRLSAMKLKENGGKRRRNGEGDIEGEYIEKYLGLKDGKSSKKFRRK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g02115 454 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 399 IPR001650 -
Accr9g02115 454 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 174 182 IPR000629 -
Accr9g02115 454 Gene3D - 234 406 IPR027417 -
Accr9g02115 454 SMART helicmild6 279 360 IPR001650 -
Accr9g02115 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 381 IPR027417 -
Accr9g02115 454 Gene3D - 13 233 IPR027417 -
Accr9g02115 454 CDD DEADc_DDX47 25 229 IPR044765 GO:0005524
Accr9g02115 454 CDD SF2_C_DEAD 240 369 - -
Accr9g02115 454 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 22 415 - -
Accr9g02115 454 Pfam Helicase conserved C-terminal domain 255 360 IPR001650 -
Accr9g02115 454 SMART ultradead3 43 243 IPR014001 -
Accr9g02115 454 Pfam DEAD/DEAH box helicase 49 217 IPR011545 GO:0003676|GO:0005524
Accr9g02115 454 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 228 IPR014001 -
Accr9g02115 454 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g02115 Accr-Chr9 45797795 45806197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g02115 25 392 Eukaryotic Initiation Factors Gene Family AT3G19760 30.376 4.31e-62 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g02115 K14777 - gmx:100775796 734.947