Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g02089 ATGGGTGAGGAGGTTAAGGCTATCGTTCCTGAGTCTGTCTTGAAGAAGCAGAAGAGGGAAGAGGAATGGGCACTTGCCAAAACACAGGAGCTTCAAGCTGCTAAGAAGAAGCGTGCAGAGAGCCGTAAGTTGATTTACAACAGAGCTAAGTTGTACGACGAGGAGTATAAGGAACAGGAGAAGGAATTAATTAGATTGAAACGTGAGGCAAAGCTTAAAGGTGGATTTTATGTTGATCCAGAAGCTAAACTTCTATTTATCATTCGCATTCGTGGTATCAATGCCATGCATCCAAAGACTAGGACAATCTTGCAGCTCTTGCGTTTGAGACAGATCTTCAATGGTGTATTCCTTAAAGTTAACAAAGCCACAATGAACATGCTTCACAGAGTTGAACCTTATGTGACTTATGGATACCCAAATCTTAAGAGTGTTAGAGAACTTATTTACAAGAGGGGTTACGGTAAGCTCAACAAGCAGAGAATTGCTTTAACTGACAACTCCGTCATTGAGCAGGCACTGGGCAAGCATGGAATCAACTGCGCTGAAGATCTTGTCCATGAGATCATAACAGTTGGGCCCCACTTTAAGGAGGCCAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTCTGGGTGGATTGAAGAAGAAGAGAAACCACTATGTTGAAGGAGGGGATGCTGGTAATAGAGAAAATTACATCAATGAGCTTATCAGGAGAATGAACTAG 732 0.4276 MGEEVKAIVPESVLKKQKREEEWALAKTQELQAAKKKRAESRKLIYNRAKLYDEEYKEQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRTILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSVIEQALGKHGINCAEDLVHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g02089 243 PANTHER 60S RIBOSOMAL PROTEIN L7 7 243 IPR039699 -
Accr9g02089 243 FunFam 60S ribosomal protein L7 189 243 - -
Accr9g02089 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Accr9g02089 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Accr9g02089 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Accr9g02089 243 Coils Coil 49 69 - -
Accr9g02089 243 Gene3D - 84 186 IPR036919 -
Accr9g02089 243 Gene3D - 187 243 IPR036919 -
Accr9g02089 243 NCBIfam 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Accr9g02089 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Accr9g02089 243 FunFam 60S ribosomal protein L7 84 188 - -
Accr9g02089 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g02089 Accr-Chr9 45496686 45498153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g02089 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.750 1.34e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g02089 K02937 - gmx:100813342 434.876