Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g02078 ATGGCAGATACTTGCAGAAGCTGTAGCTCTTGGGTCGATGACATTTACTGGACCCATTTCAAATTCACTCATTTTGCTCAGCGCCTTCCTCCTGATTTTGATCAACACCTTGCACTTCCCAAAAGGTTTTCAGATAGCTTGAAAAGAAAATTCCCAGATAATGTGACCCTTAGAGGTCCTGGTGGTGCTGAGTTGACTGTCAAATTGTCAACTAAAGATGATATTTTGCACTTCACAAATGGTTGGCAACAATTTGCGCAAGATCACTTTTTGGAAGAGAATGATCTCCTGATCTTCAAGTACAATGGTGAATCACAGTTTGATGTTCTAATATTTGACAAGAAGAACTTATGTGAGAAGGTGGCTTCTTATTTTGTTCGGGACAGCGGGCAAACAAATCAGAGAAACACAGATAATAACTGTGTGGGAGAAGAAAATATCCCTACTAATATCGATGTCAAAGGGGCTTTGCCTAAGAAATCTGCGCGTGGTAAGAGTAAAAAGACAAGTAAAAAGGCTCGTAAAGCTACAGTGGAATGCACCCCTGCCCAACCAACTAAGCGGAGAGGAAGATCTAAGGGATCTGATGCACATGCTGGAGGAATTGAATGGGTTGCTGATGCTGAAACTGCTTCCACCGGCGGAAATAAGATAATCGAAATAGTGGATGCTTCAAACCCAAAGGCTATCATAGAGAATGCGAAAAAGAATACCCTCCAGTTGGCTCAAGCAGCATGTCCCGCGGACGGATTCTATGTAGTCATGCGACCCTCGCATGTATTCCGGAGATTCTATTTGACAATCCCTATGAAGTGGATGACAGAGCATTTTCCTTTACAATCTGAAGATGTGATATTGCGTGTGGGAGAGATCGAATGGCTTGCTAAATACGTCTTTGAAGCCAGCCGTTGTACCGGCGGACTGACTGCCGGGTGGAAACAGTTTGTGATGGACAATAACCTGCGAGAATTTGATGTTTGTGTGTTCAACCAAGCAAATATAGGCAAGAAGCCACTGACCCTTGATGTGAAAATATTCAAAGTTGATGTGTAG 1053 0.4302 MADTCRSCSSWVDDIYWTHFKFTHFAQRLPPDFDQHLALPKRFSDSLKRKFPDNVTLRGPGGAELTVKLSTKDDILHFTNGWQQFAQDHFLEENDLLIFKYNGESQFDVLIFDKKNLCEKVASYFVRDSGQTNQRNTDNNCVGEENIPTNIDVKGALPKKSARGKSKKTSKKARKATVECTPAQPTKRRGRSKGSDAHAGGIEWVADAETASTGGNKIIEIVDASNPKAIIENAKKNTLQLAQAACPADGFYVVMRPSHVFRRFYLTIPMKWMTEHFPLQSEDVILRVGEIEWLAKYVFEASRCTGGLTAGWKQFVMDNNLREFDVCVFNQANIGKKPLTLDVKIFKVDV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g02078 350 SUPERFAMILY DNA-binding pseudobarrel domain 21 115 IPR015300 -
Accr9g02078 350 MobiDBLite consensus disorder prediction 155 199 - -
Accr9g02078 350 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 32 349 IPR044837 -
Accr9g02078 350 SUPERFAMILY DNA-binding pseudobarrel domain 251 339 IPR015300 -
Accr9g02078 350 SMART B3_2 25 115 IPR003340 GO:0003677
Accr9g02078 350 SMART B3_2 251 349 IPR003340 GO:0003677
Accr9g02078 350 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Accr9g02078 350 Gene3D - 230 349 IPR015300 -
Accr9g02078 350 Pfam B3 DNA binding domain 251 347 IPR003340 GO:0003677
Accr9g02078 350 Pfam B3 DNA binding domain 34 114 IPR003340 GO:0003677
Accr9g02078 350 CDD B3_DNA 24 113 IPR003340 GO:0003677
Accr9g02078 350 CDD B3_DNA 251 347 IPR003340 GO:0003677
Accr9g02078 350 Gene3D - 18 118 IPR015300 -
Accr9g02078 350 ProSiteProfiles B3 DNA-binding domain profile. 251 349 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g02078 Accr-Chr9 45381749 45386241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g02078 144 347 REM Transcription Factor Family AT4G33280 34.634 4.78e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr9g02078 B3 6.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g02078 - - pcin:129321207 551.592