Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01975 ATGGCCGGCGGAGAAGCCGGTGACGAGGACCGTACGCCAGAACTCCTAGGCCTGGTTCATGACATCGTTGCAATGTATGGCGGGGCAGCTTGTGGTTCTTCCTCCCCCTCCTCCGCCATTGTCGCCGATGCTGTGTTCAAGAAGGACTGCATCGATCTGGTTCGTCGGATCTCACATCTCTCCCATTTGTTCGAGGAGGTTAGGGATTTAAATGCTGCTAATTCGGCTGAGTTGGATGCTTCCACTTCTTCCAACTGCTCTGCCTCTTCCTGGTCCTCTGATCTGATGTTTGCTCTTCAATCTGCTAAGCGCCTTCTCTCCGTCGCTAGTAACTTTCATTTCAATTGCACTTCTGATGAAGCTGCAAAGACTATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTTTTAAGCAGATTACCGTACGACCATTTGGACATATCAGAGGAAGTTAGAGAACAGGTGGAGTTGGTGAGAACACAATTGGGTCGAGCCACTGAAAGATATGGATTTATGATCTCAAACATGTCACCTTGTGACACATCCCAGCAACTGGCTGAAAACATTAGTCAGGTTAATGGTAAATCTAGGAATCAGTTGCGTAAGCAAAACAGCTGTCCTGAGTATTTACTAAAACTGGACAACATTCCTAAAAGCAATGTAGAGAAAAGATGCAGCACGTGTCAGACCAGTCTTCACTTGGAAAGGACAAGGAGCATCCCTGTCTCTTCAGAGGCTTCCTTATCAAATGTGATTCATCCTGAAAGTCAAGAAACGTCTGAGAAGGGCCTAGCCAGAGTCAAAACACATCAAACTACTGTAATTCCTGAAGATTTTCTTTGCCCTATATCATTGGAATTAATGAGGGATCCTGTTATTGTGGCCACAGGCCAGACGTATGAGCGGTCTTACATACAGAGATGGATAGCATGTGGAAATAAAACTTGTCCAAAAACTCGCCAGAAGTTGGAAAATTTGAACCTAACACCAAATTATGTTTTGAGGAACCTTATCAATCAGTGGTGCACAGATAACAACTTTGAGCATCCAAGAGGACTAACCCATGGCAAGCTAAAACAGAGTGATGGATCATTCAGAGATGTTACCGGTGACATGGCAACCATTGAGGCTCTGGTCTCGAAGCTCTCAAGCCATTCCATTGAGGATTGTAAAGCAGCAGTCACTGAAATCCGATCACTTTCAAGACGGAGCACAGACAATAGAATACTAATTGCCGAAGCTGGAGCTATTCCAGTTCTGGTCAACTTGTTAACATCAGAAGATGTACTGACGCAAGAGAATGCAGTGACTTCGATTCTCAACCTCTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCAGGTGCCATCCCATCAATTGTGCAAGTTCTTAGAGTTGGAAGCATGGAAGCGAGAGAAAATGCTGCAGCAACCCTTTTTAGCTTATCGTTTCCAGATGAGAACAAAATAATAATTGGTTCCTCAGGAGCTTTGCCTCCTTTGATAGAATTGCTCCAAAATGGCAGCCCTAGAGGGAAGAAGGATGCAGCATCAGCATTATTCTACTTATGCATCAATGAAGGGAACAAGGGTAAGGCCATTAGATCAGGGATCATCCCTGCATTGTTGAAGAAGCTTACAGATTCAAGAAAATCAATGGTTGATGAAGCCCTAACAATAATGTCAGTTCTTGTCAGCCACCATGGGGCAAAGGCTGCTATTGTAAACGCCGGCACTATGCCTGTCTTGATCGGTCTTTTGAGTACAGGTCTGCCTCGACAAAAAGAGAATGCAGCCGGCATTTTATTTTCCTTGTGTAAGAGAGATTCTAATAATCTTGCTTGTTTAAGTACTCTTGGTGGTGTCAAGCCATTGACTGAACTTGCTCTCAGTGGCACTGAGAGAGCCAAACGGAAGGCTACTTCATTATTGGAACTCATTCGCAAGTCCCAGGAGCTTTGA 1974 0.4428 MAGGEAGDEDRTPELLGLVHDIVAMYGGAACGSSSPSSAIVADAVFKKDCIDLVRRISHLSHLFEEVRDLNAANSAELDASTSSNCSASSWSSDLMFALQSAKRLLSVASNFHFNCTSDEAAKTIVFQFQCVTWKLEKLLSRLPYDHLDISEEVREQVELVRTQLGRATERYGFMISNMSPCDTSQQLAENISQVNGKSRNQLRKQNSCPEYLLKLDNIPKSNVEKRCSTCQTSLHLERTRSIPVSSEASLSNVIHPESQETSEKGLARVKTHQTTVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIACGNKTCPKTRQKLENLNLTPNYVLRNLINQWCTDNNFEHPRGLTHGKLKQSDGSFRDVTGDMATIEALVSKLSSHSIEDCKAAVTEIRSLSRRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSFPDENKIIIGSSGALPPLIELLQNGSPRGKKDAASALFYLCINEGNKGKAIRSGIIPALLKKLTDSRKSMVDEALTIMSVLVSHHGAKAAIVNAGTMPVLIGLLSTGLPRQKENAAGILFSLCKRDSNNLACLSTLGGVKPLTELALSGTERAKRKATSLLELIRKSQEL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01975 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Accr9g01975 657 Gene3D - 356 571 IPR011989 -
Accr9g01975 657 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Accr9g01975 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515
Accr9g01975 657 SUPERFAMILY RING/U-box 277 352 - -
Accr9g01975 657 SMART arm_5 530 570 IPR000225 GO:0005515
Accr9g01975 657 SMART arm_5 407 447 IPR000225 GO:0005515
Accr9g01975 657 SMART arm_5 448 488 IPR000225 GO:0005515
Accr9g01975 657 SMART arm_5 489 529 IPR000225 GO:0005515
Accr9g01975 657 SMART arm_5 571 611 IPR000225 GO:0005515
Accr9g01975 657 CDD RING-Ubox_PUB 279 331 IPR045210 -
Accr9g01975 657 PANTHER U BOX DOMAIN-CONTAINING 47 652 - -
Accr9g01975 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515
Accr9g01975 657 SUPERFAMILY ARM repeat 377 651 IPR016024 -
Accr9g01975 657 FunFam RING-type E3 ubiquitin transferase 363 657 - -
Accr9g01975 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Accr9g01975 657 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Accr9g01975 657 Gene3D - 572 651 IPR011989 -
Accr9g01975 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Accr9g01975 657 FunFam RING-type E3 ubiquitin transferase 277 351 - -
Accr9g01975 657 Pfam U-box domain 278 348 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01975 Accr-Chr9 43094622 43097800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01975 30 654 U-box Gene Family AT1G23030 56.414 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01975 - - gmx:100815448 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01975 9 43094622 43097800 Accr9g01975 9 43094622 43097800 ECH