Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01953 ATGCCATTCAGAGATTTTGTTCGTGAGCTCAGGGGAATTCGAGATGGCATGGGTAATATATCTAGAAGAGGGATAGATGCCAAGCGTAATTATTGCCGTGGAAAATCTCTTATTGCACCTGAATTGTCATCACCGGCATCGTCATCTTTGTTAGTGACTGAGCAGAGCCGCTGGGCGAACTTGCCACCAGAATTGTTATTAGACATAATTCAAAGGGTGGAAGAAAGTGAAACTTCCTGGCCTGCCCGGCGGGTGGTTGTAGCCTGTGCCTCAGTTTGTAGGTCATGGAGAAAAATTACAGAGGAGGTGGTAAAGACACCAGAACAGTGTGGCTGGCTTACCTTTCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCTATACAGTGTTTTATAAAGAGAGAAAGGGCGACTTCAAAATATCGTTTATATCTTGGATTGAGCCCAGCTCTCTCTGGGGATATGAGCAAACTACTACTGGCAGCAAAGAAGATTAGACGGACAACATGTACAGAATTTTTGATATCCTTGGTCACAGATGATTTTTCTAAAGCAAACAATACTTATGTTGGAAAGCTGAGGTCTAATTTTCTTGGCACCAAGTTCATGATCTTGGATAGTCAGCTTCCGCTAGACTCTTCCCTCCCATTGAATGGTAAATTGCAGCCAAGAATCCATTCAAAGCAGGTTCTTCCAAAGGCTGCTGCTGCTGCTGCAAAGAATAATGTGGCCACCATATCTTATGAGCTCAATGTTCTCCGCACGAGAGGTCCAAGGAGAATGCGGTGTACGCTGCATTCAATTCCCATATCTGCCATCCAAGAAGGGGGCACTGCTCCTACTCCTTTGAAGTTTACTTATGGCCTTAATGAGCATTTATCTACCTCATACTCATCAAAAGGGGAAAAGCCAGGAGTTGAGGATGACTCAAATAGTGACTGCAAGCCCCTAGAACCGAACCACAATACAGGGGGGCCGCTGGTTTTGAACAATAAAGCTCCTAGATGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTCAAAGGCCGTGTTACAGTGGCCTCTGTGAAGAACTTTCAGCTTGTGGCAGCTGCAGAACCTCAACAAAATGTTTCAGCCACAGAGCAAGATAGAGTGATACTGCAATTTGGGAAGATTGGAAAGGACATTTTCACCATGGACTACCGCTACCCCCTCTCTGCGTTTCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGACACGAAACCTGCTTGCGAGTGA 1263 0.4553 MPFRDFVRELRGIRDGMGNISRRGIDAKRNYCRGKSLIAPELSSPASSSLLVTEQSRWANLPPELLLDIIQRVEESETSWPARRVVVACASVCRSWRKITEEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERATSKYRLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFLISLVTDDFSKANNTYVGKLRSNFLGTKFMILDSQLPLDSSLPLNGKLQPRIHSKQVLPKAAAAAAKNNVATISYELNVLRTRGPRRMRCTLHSIPISAIQEGGTAPTPLKFTYGLNEHLSTSYSSKGEKPGVEDDSNSDCKPLEPNHNTGGPLVLNNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPQQNVSATEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01953 420 CDD F-box_AtTLP-like 58 102 - -
Accr9g01953 420 PANTHER TUBBY-RELATED 48 418 - -
Accr9g01953 420 ProSitePatterns Tub family signature 2. 405 420 IPR018066 -
Accr9g01953 420 SUPERFAMILY F-box domain 55 121 IPR036047 GO:0005515
Accr9g01953 420 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Accr9g01953 420 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Accr9g01953 420 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Accr9g01953 420 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Accr9g01953 420 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Accr9g01953 420 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Accr9g01953 420 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Accr9g01953 420 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Accr9g01953 420 Pfam Tub family 119 415 IPR000007 -
Accr9g01953 420 Gene3D - 53 105 - -
Accr9g01953 420 SUPERFAMILY Tubby C-terminal domain-like 107 420 IPR025659 -
Accr9g01953 420 Pfam F-box domain 58 103 IPR001810 GO:0005515
Accr9g01953 420 Gene3D Tubby Protein; Chain A 116 420 IPR025659 -
Accr9g01953 420 MobiDBLite consensus disorder prediction 297 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01953 Accr-Chr9 42228872 42230831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01953 33 420 TUB Transcription Factor Family AT1G47270 62.750 1.38e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr9g01953 Tub 2e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01953 K19600 - qsa:O6P43_016184 610.527