Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01906 ATGGGATTGCAGAACCAGCTAAACAACGTCGCTTCAGATTCGATTCCTCTACTTTTCTTGGCTCTCGTCGCCGATTGCCTCAACCAGCTCCGCTCCTTCATTATCACTCTCCTTCACTCGCTCGGACTCTCCAGATTCGACCCGAACCCGGTCGTTGTTGACAATGGACTTTTCACCCCGGTCGGATCGGGCCTTGCCAGCTTAATCGTCCTCTCCGAGCAGCTCAATCTTAATCGCCGCGTCTCCTACAGATACTCCGTCGTAGGTGGTGGCGATGATGGTCCCGCCGGTGTGATTGGATCTCCCAAGTGTGTGGTGTGTCAGAGCACGTTCGAAGACGGCGACCAAGTTCGACGGCTTCCGTGCCGCCATGTTTTTCACCGATGCTGCTTCGATGGTTGGCTGGACCACCTTAATTTCAACTGCCCTCTCTGTCGGACACAGCTGGTGTCCGACGAGCGCGTGGCGCTTGCGGAGCGGCGCGTCGGCTCAGAGCTTGTTTCCTGGTTCTCTTTGCGGTGA 522 0.5651 MGLQNQLNNVASDSIPLLFLALVADCLNQLRSFIITLLHSLGLSRFDPNPVVVDNGLFTPVGSGLASLIVLSEQLNLNRRVSYRYSVVGGGDDGPAGVIGSPKCVVCQSTFEDGDQVRRLPCRHVFHRCCFDGWLDHLNFNCPLCRTQLVSDERVALAERRVGSELVSWFSLR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01906 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Accr9g01906 173 SMART ring_2 104 145 IPR001841 -
Accr9g01906 173 SUPERFAMILY RING/U-box 103 152 - -
Accr9g01906 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 82 157 - -
Accr9g01906 173 Pfam Ring finger domain 103 146 IPR001841 -
Accr9g01906 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01906 Accr-Chr9 41074085 41074606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01906 1 172 C3H Transcription Factor Family AT1G15100 48.256 5.56e-46 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01906 K16282 - qsa:O6P43_032678 234.958