Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01894 ATGCATAATAAGGACGGTTGCTCTTCTCCAAATGGCGGAGCCGGAACAAGCATCGCTACTTCCGGTCAAATGCAGTCGAATGGCGCCATGTATAGTGGCATCTACTCCACTCTGTTTTCTGACCAGCTATCCCTGTCTGGGAAAGACAATGTCGATCTCTCGCTTCACTCGTACGAAGGAAACGGTCCCTTGAAGTACAGTGACTCGATGATTCAGAGTCCCCTGTACGACTCCTGTGCCGTACAGAACCATCAAGATATGGTGAACCGCCATAGCATGTGGCTAAATCGCATGGCCGAAACCTCAAAGGAGATGGAGGCTCTGCGGCAGGAGAACAGCCAACTTCGGGCTGCGAACATGGAGCTGAACAACCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAATTGGATGGGTCCTCGGGTCAAACAGAAGCGTTTGACGTTATAAATGGGTTTCGTGGCTTACGAATTGAGGACAATTTCGGGGATGGGAAAGAAAACTGTGAGAATTGGAATAAGGATCAAGAGGCTTTGAACGAGAGCCCAACAAGCGTGATTGAGAACACTGTCGAAGTGGAAAGGTTCTCGCTGCCCAAGAGTATATCTGTGAGGTCAAATGGGTACTTGAAGGTTGCTCAGGCTGTAACCGGTGGTGCCAGCAATGGAAGTCGCACCAAGGCCGCTACTCGGCCGCGCACATCTTTGACTCCAACTGAAGTCGTTCAAAAGGTATATGTGCGTGGAGGGAAAAAGGAGGAAGAGCCTCTGGAAATGGTGGTGTATAACCAAGGCATGTTCAAGACGGAGCTCTGCAACAAATGGCAGGAGACAGGGACATGCCCCTACAAGGATCAGTGCCAATTCGCTCATGGTATTGGTGAACTCCGCCCAGTCATACGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTATGCCCATATGGCCACAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCGTGGCACAGCCTAAGCCCAGCAGGGCAATGAACCTGCACAGATAA 1059 0.508 MHNKDGCSSPNGGAGTSIATSGQMQSNGAMYSGIYSTLFSDQLSLSGKDNVDLSLHSYEGNGPLKYSDSMIQSPLYDSCAVQNHQDMVNRHSMWLNRMAETSKEMEALRQENSQLRAANMELNNQLSLLIQVSVQNQLDGSSGQTEAFDVINGFRGLRIEDNFGDGKENCENWNKDQEALNESPTSVIENTVEVERFSLPKSISVRSNGYLKVAQAVTGGASNGSRTKAATRPRTSLTPTEVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVAQPKPSRAMNLHR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01894 352 FunFam zinc finger CCCH domain-containing protein 15-like 261 300 - -
Accr9g01894 352 FunFam Zinc finger protein 36, C3H1 type-like 1 301 337 - -
Accr9g01894 352 SUPERFAMILY CCCH zinc finger 264 299 IPR036855 GO:0046872
Accr9g01894 352 ProSiteProfiles Zinc finger C3H1-type profile. 267 295 IPR000571 GO:0046872
Accr9g01894 352 PANTHER CCCH ZINC FINGER/TIS11-RELATED 84 340 IPR045877 GO:0003729
Accr9g01894 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 293 IPR000571 GO:0046872
Accr9g01894 352 MobiDBLite consensus disorder prediction 1 20 - -
Accr9g01894 352 Gene3D - 262 300 - -
Accr9g01894 352 Gene3D - 301 337 - -
Accr9g01894 352 Coils Coil 91 125 - -
Accr9g01894 352 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Accr9g01894 352 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Accr9g01894 352 SUPERFAMILY CCCH zinc finger 301 335 IPR036855 GO:0046872
Accr9g01894 352 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01894 66 350 C3H Transcription Factor Family AT1G68200 52.881 2.94e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr9g01894 zf-CCCH 4.7e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01894 K18753 - gmx:100796550 412.149