Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01887 ATGAACTCAGCCACCCCCTTCTTCATCCTCGTCTTGTGGGTTCTCATCAGAACCACAACCTGTTATGTGAATCCCAACTTCCAAGCTTGCGAGCCCAAAACCTGTGGAAACGGCCCGAACATAACCTACCCCTTCTATATCCAAGATAAGCAAGACTACTTCTGCGGATTCCCTTTTTTCAGTCTTGTCTGTGCTTCTAATGGCTTCCCCATGCTCAATCTCTCCAATACTTTCTACATCGTCGATGAAATTTTCTACGACAATCAATCTCTTCGAGTTTTCAACCCTAACTTTCCGATATCCAATTCCCCCAATTGTCTCTCTCCCTCCAACAACCTCACTCTCGATGACCGGTATACTGTAGCTCCAAACCAGAAGGAGGTGCGACTGTTCTTCGATTGTGAATTACCGTCGTTGCCGGAGGAGATTAAAGAGAACGTATGGGGGTGTTATGAAGGGAACCGAACGAAGTCGGTGTTGGGTATGGCGGTGGACGATGAAGCGAAGAAGTTGAAGTATGCGAATGATAATTGCCGTGGTGGGCCGATGACGACGGTGGTGGAGAATTTGGAAGGAGGGATCAGAGAGGCTTTGGGAAGAGGCTTCCTGTTGAAGTCTCCGAATTGGACGGCGAGTTATTGCGATAAATGCCAGAGCAGTGGAGGAAGGTGTGGCTTCGTCGTTACTGATGGATTTGGCTTTAGGTGCTTTTGCCCCGACCGCAACCATCGTGAGATATGTCGTTCTGTCCATTTAACTTCAGGTGCAGGCAAAGGGGCTTTGAAACTGGGACTGGGATTGGGTTTAGGGATTGGAGTCCCATGGATGATAACAATGGGGATGATTGTGTGGTGTTGGAGGAGAAGAAAATATGGAGATTCAGATTCAATAAACAGATATGGTGGTCATTCCAGCATGGAGGGTAGCAATGTGTACTTTGGAATCCCTGTTTTCTCCTACGCTGAGCTTGAAGCAGCCACCAACAATTTTGACCCTTCCACCGAACTTGGAGATGGAGGCTTTGGCGCTGTTTATTACGGCAAACTAGAAGACGGACGAGAAGTTGCAGTCAAACGCTTATATGAGCAAAACTACAAACAAGTAGAACACTTCATGAATGAAGTGAGGATCCTAACTCGCTTACACCACAAAAACCTTGTCTCCCTCTATGGCTGCACCTCCCGCCACAGCCGTGAACTCATCCTCGTCTATGAATTCATCCCAAATGGCACTGTCGCTCATCACCTCCACCTTCATAGAGATCCCAAAAGGCCCACCGTCCTACCATGGTCCACCCGCATGAAGATCGCTGTCCAAACGGCTAGAGCATTGGTCTACCTCCATGCTTCTGACATCATCCACCGTGACATCAAAACCAACAACATCCTCCTCGACGAAGTATTCAACGTTAAGGTTGCCGATTTTGGACTTTCAAGGTCTTTCCCCACTGATGTCACCCATGTTTCCACTGCTCCTCAGGGGACACCCGGTTATCTTGACCCCGATTATCACCATTGCTACCAGCTCACTAGCAAAAGTGATGTCTATAGTTTTGGAGTTGTGCTTATCGAGCTCATAACATCCATGGCAGCCGTTGACATGAGCCGGGACTCGGACTCTATTAACTTGTCCAGCTTAGCGGTGAGGAAGATTCAGAGGAGCGAGCTGAGCGAGCTGGTGGATCCTTCTCTTGGGTTTGAGAGGGATGGGGAAGTGAAGAGGATGGTGATTTTAGTGTCTCAGTTGGCGTTTCAGTGTTTACAGACTAATAAGGAGTTGAGACCTTCCATGGAGGAAGTTTTGGAGACGTTGGAGAGGATTCAAAGTGGCAGTGACGGGAGTGATCGGATGAAGGAGCCCCCACGGTTGCCGCCGGAATCACCCTGTTGGGATGAGGTTGGGTTGTTGAAGAACACAAATCCACCACCTCGTTCTCCTAACAGCGTTGCTGATAAATGGGGAAGCCAATCCACAACTCCCAACGTTAGTACTTGA 1995 0.4857 MNSATPFFILVLWVLIRTTTCYVNPNFQACEPKTCGNGPNITYPFYIQDKQDYFCGFPFFSLVCASNGFPMLNLSNTFYIVDEIFYDNQSLRVFNPNFPISNSPNCLSPSNNLTLDDRYTVAPNQKEVRLFFDCELPSLPEEIKENVWGCYEGNRTKSVLGMAVDDEAKKLKYANDNCRGGPMTTVVENLEGGIREALGRGFLLKSPNWTASYCDKCQSSGGRCGFVVTDGFGFRCFCPDRNHREICRSVHLTSGAGKGALKLGLGLGLGIGVPWMITMGMIVWCWRRRKYGDSDSINRYGGHSSMEGSNVYFGIPVFSYAELEAATNNFDPSTELGDGGFGAVYYGKLEDGREVAVKRLYEQNYKQVEHFMNEVRILTRLHHKNLVSLYGCTSRHSRELILVYEFIPNGTVAHHLHLHRDPKRPTVLPWSTRMKIAVQTARALVYLHASDIIHRDIKTNNILLDEVFNVKVADFGLSRSFPTDVTHVSTAPQGTPGYLDPDYHHCYQLTSKSDVYSFGVVLIELITSMAAVDMSRDSDSINLSSLAVRKIQRSELSELVDPSLGFERDGEVKRMVILVSQLAFQCLQTNKELRPSMEEVLETLERIQSGSDGSDRMKEPPRLPPESPCWDEVGLLKNTNPPPRSPNSVADKWGSQSTTPNVST 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01887 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Accr9g01887 664 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Accr9g01887 664 FunFam receptor-like protein kinase FERONIA 296 406 - -
Accr9g01887 664 Gene3D Transferase(Phosphotransferase) domain 1 407 619 - -
Accr9g01887 664 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 5 657 IPR044652 GO:0004672
Accr9g01887 664 MobiDBLite consensus disorder prediction 640 664 - -
Accr9g01887 664 MobiDBLite consensus disorder prediction 606 664 - -
Accr9g01887 664 SMART serkin_6 330 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g01887 664 ProSiteProfiles Protein kinase domain profile. 330 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g01887 664 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Accr9g01887 664 CDD STKc_IRAK 336 607 - -
Accr9g01887 664 Gene3D Phosphorylase Kinase; domain 1 305 406 - -
Accr9g01887 664 SUPERFAMILY Protein kinase-like (PK-like) 315 624 IPR011009 -
Accr9g01887 664 FunFam Wall-associated receptor kinase-like 20 407 617 - -
Accr9g01887 664 Pfam Wall-associated receptor kinase C-terminal 153 240 IPR032872 -
Accr9g01887 664 Pfam Protein tyrosine and serine/threonine kinase 334 604 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01887 Accr-Chr9 40763603 40766813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01887 214 663 Receptor kinase-like Gene Family AT1G25390 54.267 5.25e-159 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Accr9g01887 PK_Tyr_Ser-Thr 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01887 - - aip:107643858 719.539