Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01827 ATGAAGATTTTCGTCAAGACTCTGAAAGGCACTCACTTCGAAATTGAAGTGAAGCCAGAAGACACGGTTACTGACGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCCGCTGCAAAACAGATGCTTATCCATCAAGGGCAGGTCCTCAAAGATAGCACCACCTTGGAGGAAAATAAAGTGGTTGAAAATAGTTTTGTTGTAATTATGCTTTCTAAGAGCAAAAGCTCATCTGGTGAGGGTTCTACTGCTACTGCTGCACCTTCAACCAAAACCCCAGCTGCAAGTGCTGTTCCCACCTTGTCTTCTGTTGCAAGTTCAACCACGCCTCAAGCTCCTGCTGCTGCGCCTGCTCCTTCTCCTGCACCTGCTTCTGCTCCTGCTCCTGCTCCTGCTCCTGCCCCTGCCCCTGCTCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCGCTGCCGCTTCAGACACAGCTGTGTCAGAGTCTGATGTCTATGGACAGGCAGCATCTAACCTTGTAGCTGGAACCAACTTAGAGGGAACCATTCAGCAAATTCTCGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTAGTTCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTTGAATATTTGTACTCAGGTATTCCAGAGCAAGCTGAAGCTCCTCCGGTGGCACAAGCGCCTGCAAATACCCAAACTGCAAATCCTCCTGCACCAGCTCCACAAGCTGCACAGCCAGCGCCTGCTCCTACAAGTGGACCAAACGTGAATCCTTTAGACCTTTTTCCACAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGCACCCTAGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCAAATCCTCAAATACTCCAGCCTATGCTTCAAGAGCTTGGGAAGCAAAATCCTCATCTTATGAGATTGATTCAAGAGCACCAGACTGACTTCCTTCGCCTGATAAATGAACCAGCGGAAGGTGGTGAGGGGAACATACTAGGGCAGCTGGCTGGTGCCATGCCCCAACAAATAACTGTCACCCCTGAGGAGCGAGAAGCAATTGAACGACTTCAAGCCATGGGTTTTGATCGTGCACTTGTATTGGAGGTATACTTTGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTCTAGATCACATGCATGAGTTTGAGGACTGA 1242 0.5032 MKIFVKTLKGTHFEIEVKPEDTVTDVKKNIETVQGADVYPAAKQMLIHQGQVLKDSTTLEENKVVENSFVVIMLSKSKSSSGEGSTATAAPSTKTPAASAVPTLSSVASSTTPQAPAAAPAPSPAPASAPAPAPAPAPAPAPAPAPAPAPAPAPAAAASDTAVSESDVYGQAASNLVAGTNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVAQAPANTQTANPPAPAPQAAQPAPAPTSGPNVNPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPAEGGEGNILGQLAGAMPQQITVTPEEREAIERLQAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFED 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01827 413 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Accr9g01827 413 SUPERFAMILY UBA-like 350 411 IPR009060 GO:0005515
Accr9g01827 413 SMART uba_6 182 222 IPR015940 -
Accr9g01827 413 SMART uba_6 369 406 IPR015940 -
Accr9g01827 413 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Accr9g01827 413 MobiDBLite consensus disorder prediction 117 153 - -
Accr9g01827 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 366 407 IPR015940 -
Accr9g01827 413 MobiDBLite consensus disorder prediction 248 262 - -
Accr9g01827 413 CDD Ubl_Rad23 1 74 - -
Accr9g01827 413 MobiDBLite consensus disorder prediction 77 116 - -
Accr9g01827 413 Gene3D - 279 344 IPR036353 GO:0003684|GO:0006289|GO:0043161
Accr9g01827 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 179 223 IPR015940 -
Accr9g01827 413 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 402 - -
Accr9g01827 413 FunFam UV excision repair protein RAD23 B 279 344 - -
Accr9g01827 413 SUPERFAMILY UBA-like 180 232 IPR009060 GO:0005515
Accr9g01827 413 Pfam XPC-binding domain 288 344 IPR015360 GO:0003684|GO:0006289|GO:0043161
Accr9g01827 413 MobiDBLite consensus disorder prediction 77 159 - -
Accr9g01827 413 Gene3D - 360 408 - -
Accr9g01827 413 FunFam UV excision repair protein RAD23 1 80 - -
Accr9g01827 413 Pfam UBA/TS-N domain 185 220 IPR015940 -
Accr9g01827 413 Pfam UBA/TS-N domain 369 404 IPR015940 -
Accr9g01827 413 SUPERFAMILY XPC-binding domain 284 350 IPR036353 GO:0003684|GO:0006289|GO:0043161
Accr9g01827 413 SMART ubq_7 1 75 IPR000626 GO:0005515
Accr9g01827 413 Gene3D - 1 80 - -
Accr9g01827 413 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Accr9g01827 413 NCBIfam UV excision repair protein Rad23 1 412 IPR004806 GO:0006289
Accr9g01827 413 MobiDBLite consensus disorder prediction 232 273 - -
Accr9g01827 413 Gene3D - 175 225 - -
Accr9g01827 413 PRINTS DNA repair protein Rad23 signature 314 336 IPR004806 GO:0006289
Accr9g01827 413 PRINTS DNA repair protein Rad23 signature 363 379 IPR004806 GO:0006289
Accr9g01827 413 PRINTS DNA repair protein Rad23 signature 395 410 IPR004806 GO:0006289
Accr9g01827 413 PRINTS DNA repair protein Rad23 signature 380 394 IPR004806 GO:0006289
Accr9g01827 413 SMART CBM 286 329 IPR006636 -
Accr9g01827 413 CDD UBA1_Rad23_plant 176 225 - -
Accr9g01827 413 FunFam UV excision repair protein RAD23 homolog 360 408 - -
Accr9g01827 413 FunFam UV excision repair protein RAD23 homolog 175 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01827 Accr-Chr9 39687758 39692434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01827 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 1.95e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01827 K10839 - gmx:100809066 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01827 9 39687758 39692434 Accr9g01827 9 39687758 39692434 ECH