Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01826 ATGAAGATTTTCGTCAAGACTCTGAAAGGCACTCACTTCGAAATTGAAGTGAAGCCAGAAGACACGGTTACTGACGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCCGCTGCAAAACAGATGCTTATCCATCAAGGGCAGGTCCTCAAAGATAGCACCACCTTGGAGGAAAATAAAGTGGTTGAAAATAGTTTTGTTGTAATTATGCTTTCTAAGACCCCAGCTGCAAGTGCTGTTCCCACCTTGTCTTCTGTTGCAAGTTCAACCACGCCTCAAGCTCCTGCTGCTGCGCCTGCTCCTTCTCCTGCACCTGCTTCTGCTCCTGCTCCTGCTCCTGCTCCTGCCCCTGCCCCTGCTCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCGCTGCCGCTTCAGACACAGCTGTGTCAGAGTCTGATGTCTATGGACAGGCAGCATCTAACCTTGTAGCTGGAACCAACTTAGAGGGAACCATTCAGCAAATTCTCGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTAGTTCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTTGAATATTTGTACTCAGGTATTCCAGAGCAAGCTGAAGCTCCTCCGGTGGCACAAGCGCCTGCAAATACCCAAACTGCAAATCCTCCTGCACCAGCTCCACAAGCTGCACAGCCAGCGCCTGCTCCTACAAGTGGACCAAACGTGAATCCTTTAGACCTTTTTCCACAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGCACCCTAGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCAAATCCTCAAATACTCCAGCCTATGCTTCAAGAGCTTGGGAAGCAAAATCCTCATCTTATGAGATTGATTCAAGAGCACCAGACTGACTTCCTTCGCCTGATAAATGAACCAGCGGAAGGTGGTGAGGGGAACATACTAGGGCAGCTGGCTGGTGCCATGCCCCAACAAATAACTGTCACCCCTGAGGAGCGAGAAGCAATTGAACGACTTCAAGCCATGGGTTTTGATCGTGCACTTGTATTGGAGGTATACTTTGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTCTAGATCACATGCATGAGTTTGAGGACTGA 1188 0.5042 MKIFVKTLKGTHFEIEVKPEDTVTDVKKNIETVQGADVYPAAKQMLIHQGQVLKDSTTLEENKVVENSFVVIMLSKTPAASAVPTLSSVASSTTPQAPAAAPAPSPAPASAPAPAPAPAPAPAPAPAPAPAPAPAPAAAASDTAVSESDVYGQAASNLVAGTNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVAQAPANTQTANPPAPAPQAAQPAPAPTSGPNVNPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPAEGGEGNILGQLAGAMPQQITVTPEEREAIERLQAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFED 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01826 395 Gene3D - 157 207 - -
Accr9g01826 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 161 205 IPR015940 -
Accr9g01826 395 FunFam UV excision repair protein RAD23 B 261 326 - -
Accr9g01826 395 SUPERFAMILY UBA-like 162 214 IPR009060 GO:0005515
Accr9g01826 395 MobiDBLite consensus disorder prediction 230 244 - -
Accr9g01826 395 NCBIfam UV excision repair protein Rad23 1 394 IPR004806 GO:0006289
Accr9g01826 395 FunFam UV excision repair protein RAD23 homolog 157 207 - -
Accr9g01826 395 SUPERFAMILY XPC-binding domain 266 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Accr9g01826 395 CDD UBA1_Rad23_plant 158 207 - -
Accr9g01826 395 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Accr9g01826 395 MobiDBLite consensus disorder prediction 90 141 - -
Accr9g01826 395 Pfam XPC-binding domain 270 326 IPR015360 GO:0003684|GO:0006289|GO:0043161
Accr9g01826 395 Pfam UBA/TS-N domain 351 386 IPR015940 -
Accr9g01826 395 Pfam UBA/TS-N domain 167 202 IPR015940 -
Accr9g01826 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Accr9g01826 395 CDD Ubl_Rad23 1 74 - -
Accr9g01826 395 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 384 - -
Accr9g01826 395 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Accr9g01826 395 SUPERFAMILY UBA-like 332 393 IPR009060 GO:0005515
Accr9g01826 395 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Accr9g01826 395 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Accr9g01826 395 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Accr9g01826 395 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Accr9g01826 395 FunFam UV excision repair protein RAD23 homolog 342 390 - -
Accr9g01826 395 MobiDBLite consensus disorder prediction 214 255 - -
Accr9g01826 395 Gene3D - 1 80 - -
Accr9g01826 395 SMART uba_6 164 204 IPR015940 -
Accr9g01826 395 SMART uba_6 351 388 IPR015940 -
Accr9g01826 395 FunFam UV excision repair protein RAD23 1 80 - -
Accr9g01826 395 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Accr9g01826 395 Gene3D - 261 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Accr9g01826 395 SMART ubq_7 1 75 IPR000626 GO:0005515
Accr9g01826 395 MobiDBLite consensus disorder prediction 99 135 - -
Accr9g01826 395 SMART CBM 268 311 IPR006636 -
Accr9g01826 395 Gene3D - 342 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01826 Accr-Chr9 39687758 39692434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01826 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 1.85e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01826 K10839 - gmx:100809066 536.569