Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01797 ATGCAGACTCAGTACCCTAATTTCTCCTTCTTCTCGTCATGTTTAGAACCTGAAGAACAAGACGAACACTCCATTTCCCTCTCTCTTGGACCTCCTGGCCAACACAATATTTCTTCCAATAAGGTGAACCCCACTGCTACTTGTTCTTCGTCCAACGACGTTGTATCACTACATCATCATCATCTTCTTCACCACCAAAACCCTAACTCTGATCTTGGCGTCACCGTCGCCCTCCGCATCGGTCTCCCTGCAGCTGCCACTACTAACAGTGCTGGTGGTGGTGGTTCTAATAGCAATAAACCCGACCCATTGTTGAGTTCGTCGTCTTCTTCGGGTCATGTTCCGGGTCAGTATTGGATTCCTTCCCCTGCTCAGATCCTCATCGGGCCCACCCAATTCTCTTGCTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGCTCGCAGTATAGGAAAGGACCAGAATCACTGAGAGGGGCAAAACCAGCGTCTTCAATTCTGAGACTGCCATGTTATTGTTGCGCCGAAGGTTGTCGGAACAACATCCTCCATCCAAGGTCGAGGCCGTTGAAGGATTTCAGGACACTTCAGACACACTACAAGCGCAAGCACGGCGCCAAGCCCTTCGGCTGCCGGAAGTGCGGCAAGGCGTTCGCCGTCAGAGGAGACTGGAGGACCCACGAGAAGAATTGCGGCAAGCTCTGGTTTTGTATCTGTGGCTCTGATTTTAAGCACAAAAGATCCCTCAAAGACCACGTTCGATCCTTCGGTGACGGCCATGCTCCTCACACCGTCGACAGCCGGGACCCCCACCACCACCACCACCAAGAGTTAGAAGAAGTCGACGATGATGAAGACGAAGACGATGAATTAGAAGATGATGATAATAACAGTGACGTCTTTGTCTACAGCGGAAATCATGCCTCCATCTACTTCTGA 966 0.5052 MQTQYPNFSFFSSCLEPEEQDEHSISLSLGPPGQHNISSNKVNPTATCSSSNDVVSLHHHHLLHHQNPNSDLGVTVALRIGLPAAATTNSAGGGGSNSNKPDPLLSSSSSSGHVPGQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSILRLPCYCCAEGCRNNILHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRSFGDGHAPHTVDSRDPHHHHHQELEEVDDDEDEDDELEDDDNNSDVFVYSGNHASIYF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01797 321 MobiDBLite consensus disorder prediction 89 110 - -
Accr9g01797 321 MobiDBLite consensus disorder prediction 86 110 - -
Accr9g01797 321 SUPERFAMILY beta-beta-alpha zinc fingers 126 154 IPR036236 -
Accr9g01797 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Accr9g01797 321 SUPERFAMILY beta-beta-alpha zinc fingers 201 238 IPR036236 -
Accr9g01797 321 MobiDBLite consensus disorder prediction 263 307 - -
Accr9g01797 321 PANTHER ZINC FINGER PROTEIN WIP2 24 296 IPR043584 GO:0003700|GO:0010468
Accr9g01797 321 FunFam Zinc finger protein WIP2 187 269 - -
Accr9g01797 321 MobiDBLite consensus disorder prediction 263 288 - -
Accr9g01797 321 Gene3D Classic Zinc Finger 177 267 - -
Accr9g01797 321 SMART c2h2final6 133 155 IPR013087 -
Accr9g01797 321 SMART c2h2final6 181 213 IPR013087 -
Accr9g01797 321 SMART c2h2final6 218 238 IPR013087 -
Accr9g01797 321 MobiDBLite consensus disorder prediction 289 306 - -
Accr9g01797 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 238 IPR013087 -
Accr9g01797 321 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Accr9g01797 321 Gene3D Classic Zinc Finger 132 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01797 Accr-Chr9 39267988 39269549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01797 21 277 C2H2 Transcription Factor Family AT1G13290 70.000 1.45e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr9g01797 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01797 - - qsa:O6P43_025679 397.897