Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01794 ATGGACGCAGGAAGCTCCATGGACGAAAGCGTTACAACTGATTCAGTTTCTGTTTCCCTTTCTCCAGTGACGATTCCGTCGAACAAGTCATCACCACCACTGCCCAAAAATCTGTGCCGCGTCGGCAGCGGTGCTAGCACCATCGTGGACTCGGACATGGTTGGAGTCGAAGCCGAGTCCCGGAAACTGCCGTCGTCGAAATACAGAGGTGTCGTACCGCAGCCTAATGGACGTTGGGGTGCTCAGATTTACAAGAAGCACCAGCGAGTGTGGCTGGGCACTTTCATTGAAGAAGACGAGGCAGCAAGAGCTTACGACATCGCCGCGCAGCGATTCCGTGGCCAATATGCAGTCACCAATTTTACTCCTCTTGCCGTCGCCGGAGTCAGCCCCGGCGCCGATGATGACCACGACGTCTACGAAGCAGCGTTCCTCAACGCGCATTCGAAAGCCGAGATCGTCGACATTCTAAGGAAACACACTTACAATGACGAGCTGGAACACTTCAAGCGAAACTATGGATTAACGGTGGATGCGAACGGGAAAAGGATCATCAAGGAAGGATGCAAGGGTTCGGGTCGGGTCAACGATGCGGCGCGTGATCAGCTATTTGAGAAAGCAGTGACACCGAGCGATGTTGGAAAATTGAATCGGTTGGTGATCCCGAAGCAGCACGCAGAGAAGCACTTCCCCATGCCGTTGCCGGTGGGAGTCTCCGCACCGTCCGCAGCAACGACAGCGTCAGCCACGAAGAGCGTATATCTGAATTTCGAAGACGGCGGTGGGAAGCTTTGGAGGTTCAGGTACTCGTACTGGAATAGTAGCCAGAGCTACGTTCTGACGCAAGGATGGAGCCAGTTCGTGAAGGATAAGAACCTCAAAACCGGCGATACGGTTTTTTTCTCCCGGTCCACTGGACCCGACAAGCAACTGTACATCGACAGGAAGAACGCCAGAATTAGTACTACCACCACCTGCAGTACTACAAATTCAGGAGGCGCCGAATGGTTTGAACCGGCGGGTCCAGTGATAAGACTTTTCGGGGTCAACATTTTTCATATGCCCGGTTCAGAATTAGACTGCCAAATCCAAAACCTAAAAAGGACCGTTCGGGATGAAAAGTCGGATTCAATACCACATAAAAGGAAGAAAAACCAAAGAGGTAAAATAGAAAACGAAAAGGGAGCCCGTAAGAAACTTCTACCTTCATGA 1212 0.5173 MDAGSSMDESVTTDSVSVSLSPVTIPSNKSSPPLPKNLCRVGSGASTIVDSDMVGVEAESRKLPSSKYRGVVPQPNGRWGAQIYKKHQRVWLGTFIEEDEAARAYDIAAQRFRGQYAVTNFTPLAVAGVSPGADDDHDVYEAAFLNAHSKAEIVDILRKHTYNDELEHFKRNYGLTVDANGKRIIKEGCKGSGRVNDAARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPMPLPVGVSAPSAATTASATKSVYLNFEDGGGKLWRFRYSYWNSSQSYVLTQGWSQFVKDKNLKTGDTVFFSRSTGPDKQLYIDRKNARISTTTTCSTTNSGGAEWFEPAGPVIRLFGVNIFHMPGSELDCQIQNLKRTVRDEKSDSIPHKRKKNQRGKIENEKGARKKLLPS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01794 403 MobiDBLite consensus disorder prediction 370 403 - -
Accr9g01794 403 SUPERFAMILY DNA-binding pseudobarrel domain 203 316 IPR015300 -
Accr9g01794 403 SMART B3_2 204 317 IPR003340 GO:0003677
Accr9g01794 403 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Accr9g01794 403 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Accr9g01794 403 Pfam B3 DNA binding domain 204 308 IPR003340 GO:0003677
Accr9g01794 403 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Accr9g01794 403 ProSiteProfiles B3 DNA-binding domain profile. 204 317 IPR003340 GO:0003677
Accr9g01794 403 MobiDBLite consensus disorder prediction 6 34 - -
Accr9g01794 403 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 372 IPR044800 GO:0003700
Accr9g01794 403 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Accr9g01794 403 MobiDBLite consensus disorder prediction 1 36 - -
Accr9g01794 403 Gene3D - 193 330 IPR015300 -
Accr9g01794 403 CDD B3_DNA 203 304 IPR003340 GO:0003677
Accr9g01794 403 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Accr9g01794 403 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Accr9g01794 403 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01794 Accr-Chr9 39135456 39136667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01794 1 354 B3 DNA Binding Superfamily AT1G25560 55.738 1.59e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Accr9g01794 B3 1.3e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01794 K09287 - fve:101305654 409.838