LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr9g01721	ATGAAAAGAAGAGAAGATTCTTCTTTCTCCATTTCAGCTTTCTTCATCATCATCTTCTTCTTCTTCTTCTGCACTTCAGTATCTGGCTTGGTTTCTTCTAAAGGTGTCAACGATGAAGTACAAGCTCTTATAGCAATTAAAAGTTCTTTAAAGGATCCCAACAATACCCTTCATAACTGGGATATGTATGAAGTGGAACCTTGTAACTGGGCTTTCATATCTTGTAGTGATGGTTCTGTGATTACCCTGGAATTTCCAAGCCAGAACTTTTCGGGTTCTCTTTCCCCAAGCATTAGCAACTTAACCAATCTCATCACTCTGAGACTGCAAGATAATAACATAACAGGACCAATTCCTTCTGAGATTGGGATGATGAAAAAGCTTCAAACTCTTGATCTTTCTCGTAATTCCTTCACTGGTCAACTTCCAGAGAGTCTCTCCCACATGAAGAGTCTCAAATATCTGAAGCTGAACAATAATAGTCTTATGGGACCAATACCTTCCTCTTTGGCTCACATGACCCAGCTTGCTATTCTGGATATATCTTATAATAACTTGAGTGGACCTCTACCTACAATAAATGCAAAAACATTCAATCTTGTAGGAAATCCCCTGATTTGTGCCAGTGGAACTGACCAACATTGCTTGAGAACAACACAACTTTCTACTAATTTTAATAACTCTCAAGGTTCACAAGCCACCAGTAAAAAAAAGAATCACAAACTTGTCTTGGCACTTGCTTTAACAGTAAGCTGCATCAGCTTACTAACTCTGGTGTTTGGCTTCCTCTGGTGGACACAAAGATCAAGCAAACAAGTTTTCTCTGACATTAATGAACAAAGGCAAGAAGATGTCGGCCTTGGAAACTTGAGGAAGTTCCACATAAGAGAACTCGAGGTTGCGACGAACAAGTTCAGCAGCAAGAACTTGGTCGGCAAAGGAGGATATGGGAATGTGTACAAAGGCTATCTATCAGATGGTGGAGTCATAGCTGTGAAAAGGCTTAGAGATGGAAGTGCCATTACAGGGGAAATTCAGTTTCAGACTGAAGTTGAGATGATCAGCCTCGCTGTACATCGAAACTTGCTTCGTCTCTATGGATACTGCATCACTCCTACGGAGAGACTCTTAGTTTATCCTTTCATGTCCAATGGTAGTGTCGCTTCTCGTCTCAAAGTGAAGCCTACTTTAGAGTGGAGCACGAGGAAGAGGATAGCTTTGGGAGCAGCAAGAGGGTTAGTATACCTACATGAGCAATGTGATCCCAAGATTATTCATAGGGATGTGAAGGCTGCAAATATATTGCTTGATGAGTATTGTGAAGCTGTGGTTGGGGATTTTGGGTTGGCTAAGCTGTTAGATCATAGGGACTCACATGTCACCACAGCTGTTCGAGGCACTGTTGGCCATATAGCACCAGAGTACCTCTCAACAGGCCAATCTTCTGATAAAACTGATGTCTTTGGCTTTGGCATTCTTCTACTCGAACTCATCTCCGGCCACACAGCTCTTGAATTTGGAAAAGCAGCTAACCAGAAAGGAGCCATGCTCAATTGGGTGAAGAAAATGCATCAAGAAAAGAAACTTGACTTGTTGATTGACAAGGACCTTAGGAACAACTATGACAGAATGGAGCTCGAAGAATTGGTTCGAATAGCACTCTTGTGTACCCAGTACCTTCCAGCTCATAGACCCAAAATGTCTGAAGTGGTTAGAATGCTTGAAGGAGATGGCCTTGCAGAGAAATGGGAAGCTTCAAAGGGATCATCTGAATCAACAAGGAGCAGAGCAAATGAGCTATCCTCTTCAGAACGCTACTCCGATCTCACCGACGATTGTATACTGTTTAATCAGGCCATGGAGCTTTCTGGTCCCAGGTGA	1881	0.4226	MKRREDSSFSISAFFIIIFFFFFCTSVSGLVSSKGVNDEVQALIAIKSSLKDPNNTLHNWDMYEVEPCNWAFISCSDGSVITLEFPSQNFSGSLSPSISNLTNLITLRLQDNNITGPIPSEIGMMKKLQTLDLSRNSFTGQLPESLSHMKSLKYLKLNNNSLMGPIPSSLAHMTQLAILDISYNNLSGPLPTINAKTFNLVGNPLICASGTDQHCLRTTQLSTNFNNSQGSQATSKKKNHKLVLALALTVSCISLLTLVFGFLWWTQRSSKQVFSDINEQRQEDVGLGNLRKFHIRELEVATNKFSSKNLVGKGGYGNVYKGYLSDGGVIAVKRLRDGSAITGEIQFQTEVEMISLAVHRNLLRLYGYCITPTERLLVYPFMSNGSVASRLKVKPTLEWSTRKRIALGAARGLVYLHEQCDPKIIHRDVKAANILLDEYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSDKTDVFGFGILLLELISGHTALEFGKAANQKGAMLNWVKKMHQEKKLDLLIDKDLRNNYDRMELEELVRIALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWEASKGSSESTRSRANELSSSERYSDLTDDCILFNQAMELSGPR	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr9g01721	626	ProSitePatterns	Protein kinases ATP-binding region signature.	311	333	IPR017441	GO:0005524
	Accr9g01721	626	SMART	serkin_6	305	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr9g01721	626	FunFam	Somatic embryogenesis receptor kinase 1	274	381	-	-
	Accr9g01721	626	Pfam	Leucine rich repeat	127	186	IPR001611	GO:0005515
	Accr9g01721	626	MobiDBLite	consensus disorder prediction	590	605	-	-
	Accr9g01721	626	Gene3D	Ribonuclease Inhibitor	36	217	IPR032675	-
	Accr9g01721	626	FunFam	Somatic embryogenesis receptor-like kinase 1	382	594	-	-
	Accr9g01721	626	Pfam	Leucine rich repeat N-terminal domain	37	76	IPR013210	-
	Accr9g01721	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	424	436	IPR008271	GO:0004672\|GO:0006468
	Accr9g01721	626	Gene3D	Transferase(Phosphotransferase) domain 1	382	593	-	-
	Accr9g01721	626	Pfam	Protein kinase domain	306	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr9g01721	626	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	17	585	-	-
	Accr9g01721	626	ProSiteProfiles	Protein kinase domain profile.	305	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr9g01721	626	SUPERFAMILY	Protein kinase-like (PK-like)	290	576	IPR011009	-
	Accr9g01721	626	SUPERFAMILY	L domain-like	37	200	-	-
	Accr9g01721	626	MobiDBLite	consensus disorder prediction	584	605	-	-
	Accr9g01721	626	Gene3D	Phosphorylase Kinase; domain 1	274	381	-	-
	Accr9g01721	626	FunFam	Somatic embryogenesis receptor kinase 1	35	217	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr9g01721	Accr-Chr9	37288200	37292906	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr9g01721	12	626	Receptor kinase-like Gene Family	AT5G16000	67.040	0.0	852

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Accr9g01721		Pkinase	1.2e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr9g01721	-		-	gmx:100790194	913.679