Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01660 ATGGGGAGAGGTAGGGTTCAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTTACTTTCTCAAAGAGAAGAGTTGGATTAACAAAGAAGGCTCATGAGATCTCTGTGCTCTGTGATGCTGAGGTTGCTTTGGTCGTCTTCAATCACAAAGGAAAGCTCTTCGAATATGCCTCTGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAACTATAACTATGCTGAGAGGCAGCTTACTGGAAATGATTCTGGGACGACACAGGAAAACTGGATCATTGAGTATTCTAGACTGAAGGCTAAGATTGATCTGATGGAGAGAAACCAAAGGAATTATATGGGAGAAGATCTTGCTTCACTCAGTCTCAAAGAGCTTCAGAGTTTGGAGCAACAATTAGAAACAGCTATCAAACATATCCGTACACGCAAAAACCAGCTCATGTACGAGTCCATTTCTTGCCTTCAGAAAAAGGAGAAGATGATACAGGGAGAGAATAGCATGCTCACTAAGAAGATAAAGGAAAGCGAGAAGGCTGCAACAGCAGAGGCACAGCAGGCACAGTGGGAGCAGCCAAACCATCATGCTGCTGCTCCTAACCCTTCTTTCTTACTTCGTCATCCTCTTACTTTAATCACCGGTGGTAATTACGTTGAAGAAGAAACAGCAGTGATGGGAAGGAACGATCTTGACCTGACCCTTGAGCCAATGTATAGCGGCCACATCGATTGCTTTAATACTAATTTATAA 750 0.432 MGRGRVQLKRIENKINRQVTFSKRRVGLTKKAHEISVLCDAEVALVVFNHKGKLFEYASDSCMEKILERYENYNYAERQLTGNDSGTTQENWIIEYSRLKAKIDLMERNQRNYMGEDLASLSLKELQSLEQQLETAIKHIRTRKNQLMYESISCLQKKEKMIQGENSMLTKKIKESEKAATAEAQQAQWEQPNHHAAAPNPSFLLRHPLTLITGGNYVEEETAVMGRNDLDLTLEPMYSGHIDCFNTNL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01660 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr9g01660 249 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr9g01660 249 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Accr9g01660 249 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Accr9g01660 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr9g01660 249 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Accr9g01660 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Accr9g01660 249 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Accr9g01660 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr9g01660 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr9g01660 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr9g01660 249 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr9g01660 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr9g01660 249 Coils Coil 123 146 - -
Accr9g01660 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01660 Accr-Chr9 35006665 35014978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01660 1 245 MADS-box Gene Family AT1G26310 63.424 4.14e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr9g01660 K-box 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01660 K09264 - gmx:100810129 324.709