Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr9g01599 | ATGGAGGAGACGAGGAAGTTTGTGTGCAGGTTCTGCAACAAGAGGTTCCCAAATGGGAAGTCTCTGGGTGGTCACATTAGAACCCACATGAATCAACATTCAAGAAATAGGGCCATTGCTGATTCAAGCAAGTTTGCAAGTGATGATGTTGATGATGAAGGTGCGAGAAGGAAGAGGAAGAAGAGAGATTTAAGTTCAGATTATGGTCTCAGAGAGAATCCCAGAAAAACAAAGAGGTTCGTTCATCCCTTCTTCACTTTACATCATAAGGAGAAGTTCTGTAGAGAATGTGGGAAAGGATTTTCTTCTTCGAAAGCTCTATGTGGTCACATGGCGTGTCACACTTCTGATAAACAGAAATTTGCAATAATGGATGATGTTCAATCTGATACTGAAACTTCTGATCCAGAGGACTTGAAGAGAACAAGGTTCATGACCCTTAATAATAGGAATAACGATAACCCAACTTCTTCTGTGTCAGAGGTTGAAGAGGAGGAAGAAGAAGGAGTAGAAGAGGTGGCTATTTGCTTGATGTTGTTGTCTAAGGGTTTTTATAGCCGTGAAGGTGGTTTTGATTTGGACAAAGAGTCTAATTCTGACAACTATTCTGCAATTTTAGAGGCCAAAGCCAAATCACACTCTCTTGATGCCAGAATTGGTATAAATGATGGTCAGAATAAGGTTAAGAACTCTGTTCATAATGATACTTCTGAGATTGTGAAGGTGGGAAAGGACAAGACGAAGTTGAAGACTTTAGATTCTGGGTATTCTAGATATGGTTCCAAAATGGAAGATTCAAATGTTTCAATTCATGGGGTTTTCAGGAATGATGGTTTTAATGGACCAAAAGTGAAAGATGGGTATGGATTTAAGGATTATGATGTCTCTGAACCAAAGAAGATGATGAACAACAGAAGCAGGAACAGTAGTGAATCCAAGAAACTAGTGTTGGGAAATTTAGACAAGTTTGATGATTCATTTAACAGTGCCAAACAAGAAAATGTTGGTAACAATTTGGATGATCAAGTTTCCTGCAAGAAGAAGAAGAAAACCAGTTTTCCTAATCATGAAGTCGTCTACAAGAAAGACTCATATGACTCAGAATCATCATCATATGATAGTACTGATTCTGATTCTTTTCCTTATTCTTCTTATCAGAAGCCTAAGAGCAGTAACAAGCTGGCTAAGAGTAAGAAAGTGATGAAGTCGTCAAAGAAAACAAAGGAGCATGAGTGCCCAATTTGTAACAGAACTTTCAGGTCAGGTCAAGCCTTGGGAGGTCACAAAAGGTCCCATCTTGTAGATGGATTTGAAGAGAACAACAACAACAACAACAACAACAACAACAATGGATTAATAGTTCATCAAGAATCTCCTTCTCCTCCTGTTGTTCCTTCTCCTTCTCCTCCTGTTGTTCCTTCTCCTCCTCCTTCTGTTGTTCCTTGCCTGATAGATCTTAATCTACCTGCTCCTGCTGATGAATAA | 1485 | 0.3912 | MEETRKFVCRFCNKRFPNGKSLGGHIRTHMNQHSRNRAIADSSKFASDDVDDEGARRKRKKRDLSSDYGLRENPRKTKRFVHPFFTLHHKEKFCRECGKGFSSSKALCGHMACHTSDKQKFAIMDDVQSDTETSDPEDLKRTRFMTLNNRNNDNPTSSVSEVEEEEEEGVEEVAICLMLLSKGFYSREGGFDLDKESNSDNYSAILEAKAKSHSLDARIGINDGQNKVKNSVHNDTSEIVKVGKDKTKLKTLDSGYSRYGSKMEDSNVSIHGVFRNDGFNGPKVKDGYGFKDYDVSEPKKMMNNRSRNSSESKKLVLGNLDKFDDSFNSAKQENVGNNLDDQVSCKKKKKTSFPNHEVVYKKDSYDSESSSYDSTDSDSFPYSSYQKPKSSNKLAKSKKVMKSSKKTKEHECPICNRTFRSGQALGGHKRSHLVDGFEENNNNNNNNNNNGLIVHQESPSPPVVPSPSPPVVPSPPPSVVPCLIDLNLPAPADE | 494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr9g01599 | 494 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 412 | 432 | IPR013087 | - | |
| Accr9g01599 | 494 | MobiDBLite | consensus disorder prediction | 42 | 71 | - | - | |
| Accr9g01599 | 494 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 92 | 119 | IPR013087 | - | |
| Accr9g01599 | 494 | MobiDBLite | consensus disorder prediction | 438 | 456 | - | - | |
| Accr9g01599 | 494 | MobiDBLite | consensus disorder prediction | 460 | 477 | - | - | |
| Accr9g01599 | 494 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 7 | 34 | IPR013087 | - | |
| Accr9g01599 | 494 | Pfam | C2H2-type zinc finger | 410 | 432 | - | - | |
| Accr9g01599 | 494 | Pfam | C2H2-type zinc finger | 7 | 30 | - | - | |
| Accr9g01599 | 494 | Pfam | C2H2-type zinc finger | 94 | 114 | - | - | |
| Accr9g01599 | 494 | Gene3D | Classic Zinc Finger | 1 | 119 | - | - | |
| Accr9g01599 | 494 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 9 | 29 | IPR013087 | - | |
| Accr9g01599 | 494 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 410 | 432 | IPR013087 | - | |
| Accr9g01599 | 494 | MobiDBLite | consensus disorder prediction | 342 | 369 | - | - | |
| Accr9g01599 | 494 | MobiDBLite | consensus disorder prediction | 438 | 477 | - | - | |
| Accr9g01599 | 494 | SMART | c2h2final6 | 410 | 432 | IPR013087 | - | |
| Accr9g01599 | 494 | SMART | c2h2final6 | 92 | 114 | IPR013087 | - | |
| Accr9g01599 | 494 | SMART | c2h2final6 | 7 | 29 | IPR013087 | - | |
| Accr9g01599 | 494 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 94 | 114 | IPR013087 | - | |
| Accr9g01599 | 494 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 114 | IPR036236 | - | |
| Accr9g01599 | 494 | MobiDBLite | consensus disorder prediction | 34 | 71 | - | - | |
| Accr9g01599 | 494 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 493 | - | - | |
| Accr9g01599 | 494 | MobiDBLite | consensus disorder prediction | 370 | 391 | - | - | |
| Accr9g01599 | 494 | MobiDBLite | consensus disorder prediction | 328 | 407 | - | - | |
| Accr9g01599 | 494 | SUPERFAMILY | beta-beta-alpha zinc fingers | 407 | 434 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr9g01599 | Accr-Chr9 | 33359110 | 33360594 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr9g01599 | 5 | 494 | C2H2 Transcription Factor Family | AT1G26610 | 35.125 | 1.16e-60 | 204 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Accr9g01599 | zf-C2H2_6 | 2.3e-11 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr9g01599 | - | - | pcin:129284607 | 526.939 |