Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01520 ATGATCGTGGACGAGAAAAAGGCAACGATAGCGATGGCCGAAGAAGGGTATATGCAACAGCTCAGATCTAAAGCAACAGAGCTTCTCCTAAGAGAAGAATGGAAGGAGTCCATCGAAGCCTATTCAAACTTCATCACTCTCTGCGAAAACCAAATCGTCCATTCCCAAGACTATGCAGACTCAGATCAGCTTCAAAGGCTGCGAAAATCCCTCTGCTTAGCCCTTTCAAACAGAGCCGAAGCAAGATCGAGATTGAAAGAGTTTCACTCTGCGTTGGAAGATTGTGATTTAGCTTTGGTAATCGACGAGACACATTTCAAGACTCTGATCTGCAAAGGTAAGATATTGCTCAATCTCAATATGTATTACGCGGCTTTGGAATGCTTCAGAGTCGCTCTTCGTGATCCCCAGGCTAATGGGAACTCTGAAAACCTAAATGGGTATGTCGAGAAGTGTAAAAAACTCGACTTTCTCTCCAGAACTGGATCTCTGGACCTTTCCGATTGGGTTTCAAATGGGTTTCGAGGGAAGTCTCCAGAACTTGCAGAGTTTATTGGTTCTGTGGAGATCATGAAATCTGAGATCAGTGGACGTGGGTTGTTTGCAACTAAGAACATCGATGCAGGGGGGTTGGTTTTGATCACAAAGGCAATAGCGATGGAAAGGAGTGTATTGGGGGGCAAAGATCTGAGTGAGGAAGCTCAATTAGTGATGTGGAAGAATTTCATTGATAAAGTTACAGACTTTGTTAGAAAATGTCACAGAACAAGCAACTTGATCTGCCAATTGTCAACTGGGGAAGATGAAGATTCACTTGAGGTACCTGATATAGCTCTCTTTAAACCAGGAACAGAGTTGAAGAACAAGAGCAAGAACAATCAACCCAGTGAGACTGAGGAGATTGATAAGGGTGAGTTACTAGCCATATTGGATGTGAATTCTCTAACTGAAGATTCAGTTTCAGCCAATGTATTAGGGAAGAAGAACAATGAGTATTATGGTGTTGGGCTATGGTTATTACCTTCCTTCATCAACCATTCCTGTTATCCAAATGCAAGGAGATTACATGTAGGTGACTATCTGATAGTTCATGCTTCTAAAGATATCAAAGCAGGTGAAGAAATTACCTTTGCCTATTTGGACCCACTTTCTACATTGCACAAGCGCAAAGAGATGTCAATGACATGGGGTATCCAATGTAGGTGTAAGAGATGCAAGTTTGAGTCAGAAATCATGTGCAAACAAGAGATGAGAGAGATTGAGATTGGTCTTGAAAGAGGGATGGATGTGGGAAGTGCAGTGTACAAATTAGAAGAAGAAATGAAGAGATGGAAAGTGAGAGGGAAAGAGAAAGCCTATTTGAGGGCATCATTTTGGTCTGCATATTCTGAGGTTTATAGGACTGAAAGGTTCATGAAGAGGTGGGGACGGCGTATTCCAGCCATGGAAGCTGTCGTTTATAGCGTCATAGATGTTATAGGAGGAGATGAGAGGCTGCTTAAGATTCAACTGGAGGAGATGAAGAAAAATGGAGGTGGTGGTGGACTTGTGGAGATGGAGAAAGCTTTGAAACTGGCAAGAGAAGTGTATGGGAAGGTGGTGAAGAAGCAGGCCATGAGGACTCTTCTTGAGCTTTGTGTTGCAACTGGTGAATGA 1656 0.4281 MIVDEKKATIAMAEEGYMQQLRSKATELLLREEWKESIEAYSNFITLCENQIVHSQDYADSDQLQRLRKSLCLALSNRAEARSRLKEFHSALEDCDLALVIDETHFKTLICKGKILLNLNMYYAALECFRVALRDPQANGNSENLNGYVEKCKKLDFLSRTGSLDLSDWVSNGFRGKSPELAEFIGSVEIMKSEISGRGLFATKNIDAGGLVLITKAIAMERSVLGGKDLSEEAQLVMWKNFIDKVTDFVRKCHRTSNLICQLSTGEDEDSLEVPDIALFKPGTELKNKSKNNQPSETEEIDKGELLAILDVNSLTEDSVSANVLGKKNNEYYGVGLWLLPSFINHSCYPNARRLHVGDYLIVHASKDIKAGEEITFAYLDPLSTLHKRKEMSMTWGIQCRCKRCKFESEIMCKQEMREIEIGLERGMDVGSAVYKLEEEMKRWKVRGKEKAYLRASFWSAYSEVYRTERFMKRWGRRIPAMEAVVYSVIDVIGGDERLLKIQLEEMKKNGGGGGLVEMEKALKLAREVYGKVVKKQAMRTLLELCVATGE 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01520 551 Gene3D SET domain 284 436 IPR046341 -
Accr9g01520 551 SUPERFAMILY TPR-like 19 135 IPR011990 GO:0005515
Accr9g01520 551 SUPERFAMILY SET domain 187 406 IPR046341 -
Accr9g01520 551 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 16 545 - -
Accr9g01520 551 SMART set_7 186 386 IPR001214 GO:0005515
Accr9g01520 551 Gene3D Tetratricopeptide repeat domain 14 156 IPR011990 GO:0005515
Accr9g01520 551 ProSiteProfiles SET domain profile. 186 380 IPR001214 GO:0005515
Accr9g01520 551 SMART tpr_5 72 105 IPR019734 GO:0005515
Accr9g01520 551 SMART tpr_5 106 139 IPR019734 GO:0005515
Accr9g01520 551 SMART tpr_5 18 51 IPR019734 GO:0005515
Accr9g01520 551 CDD SET_SMYD 298 405 - -
Accr9g01520 551 Pfam SET domain 197 379 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01520 Accr-Chr9 29428135 29429790 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr9g01520 SET 7.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01520 - - qsa:O6P43_025489 779.245