Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01510 ATGGGCAGGGTAAAGCTCAAGATTAAGAGACTAGAGAATACCAATGGTCGCCAGGCGACTTTTGCTAAAAGAAAGAATGGAATCATAAAGAAGGCTACTGAGTTATCAATATTGTGCGATATAGAGATAATTCTGCTCATGTTCTCACCATCTGGCAAGCCCTCATTGTGCAGAGGACTACGCAGTAACATGGAGGAGGTTATTGAGAAGTTTGCACAATTATCTCCACAGGAGAGGGCAAAACGGAAGTTGGAGAGTCTGGAAGCACTGAAAAAAACATTTCGGAAGTTAGACCATGATGTCAATATACAAGAATTTCTGGGTACAAATAGTCAAACTGAAGAGGACCTAAGGAATCAATCCAGGTTATTGCAAACTAAGATTTCTGAAATACGTAATAGATTGAGCTGTTGGACTAAGCCTGACAAAATAAACAATGTGGAACAATTAGGACAAATGGAACATTCACTTAGGGAGTCACTCAATAACATTCAAATACGCAAGGAAAATATACAAAAGCAGCAACTTGCGAGATTGGAATGCACTAACCAGTTCAATGAGATGCAGATCCCCTACAGAATGAGTACTGATCAACATCTTCAATCAATTTCATGGGTTCCTAATAATGACGGTCAACATATAGTTTTACCTGAGGACTCAGACTTGCGTCTTCACAAAGAACTTAAGTGCTCTGCAAGCTCTTCTTTTGGGAGTCATGCTAGTTATCTTGGCTCAAGTATGAAAACAGAAATGTCTAGTTCTGGACAAGAAAATGGTGTCCTCGGTGATTTGACCAATAATGCTCCTGTGAGACTACAGTTCGGGCAGTTTCAATATGGACTACCACCATACAATTACAATTTACTGAATGACACAAGGTTCCAACCAGCTGTGGAGATGAACCCTCATGAAAATCCCTTAGATTATCGCGTTAATGGAAGCTTTGAAGCCCCTCAACCTGGTGATGACGATAACCACCATGGATGGGCTTCCACATCAAGGTCCGGTGCCACAACTTTGTTTGATGAGCATTTGTATGCCCAGCAACCAGACTGGTCACTCCAGTCATCAGCTAATGATGTTGTTTTAGAACTTCAGTCATGCTTGTGA 1110 0.4108 MGRVKLKIKRLENTNGRQATFAKRKNGIIKKATELSILCDIEIILLMFSPSGKPSLCRGLRSNMEEVIEKFAQLSPQERAKRKLESLEALKKTFRKLDHDVNIQEFLGTNSQTEEDLRNQSRLLQTKISEIRNRLSCWTKPDKINNVEQLGQMEHSLRESLNNIQIRKENIQKQQLARLECTNQFNEMQIPYRMSTDQHLQSISWVPNNDGQHIVLPEDSDLRLHKELKCSASSSFGSHASYLGSSMKTEMSSSGQENGVLGDLTNNAPVRLQFGQFQYGLPPYNYNLLNDTRFQPAVEMNPHENPLDYRVNGSFEAPQPGDDDNHHGWASTSRSGATTLFDEHLYAQQPDWSLQSSANDVVLELQSCL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01510 369 Coils Coil 77 97 - -
Accr9g01510 369 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 213 - -
Accr9g01510 369 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Accr9g01510 369 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Accr9g01510 369 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr9g01510 369 MobiDBLite consensus disorder prediction 311 331 - -
Accr9g01510 369 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Accr9g01510 369 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr9g01510 369 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr9g01510 369 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr9g01510 369 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Accr9g01510 369 Coils Coil 114 134 - -
Accr9g01510 369 Coils Coil 154 174 - -
Accr9g01510 369 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01510 Accr-Chr9 29144655 29159420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01510 1 351 Type I MADS-box Gene Family AT2G03060 48.446 2.98e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr9g01510 SRF-TF 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01510 - - lang:109356063 495.738