Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01402 ATGTCGGTTCTAATCGTCACGAGCTTAGGAGACTTAGTGGTAGATTTGTACTCCGATAAGTGCCCCTTGACGAGTAAAAATTTCTTGAAGCTTTGCAAGATGAAATACTACAATGGATGTCTATTTCACACAATTCAGAAAGATTTCACTGCTCAGACTGGTGATCCAACTGGAATTGGGAGTGGTGGTGATTCTGTTTACAAATTTCTCTATGGTGATCAAGCTCGCTTTTTTAGTGATGAGATTCATATTGATTTAAAGCATTCTAAGACTGGTACAGTTGCCATGGCTAGTGCTGGAGAGAACCTGAATGCTTCCCAATTCTACATCACTCTGCGTGATAATCTTGATTATCTTGATGGAAAGCACACTGTTTTTGGTGAGGTAGCTGAAGGGCTTGACACTTTGACTAGAATAAATGAGGCTTACGTGGATGAGAATGGGAGACCTTATAAAAATATCCGAATCAAGCACACTTACATCTTAGATGATCCTTTCGACGATCCTCCTCCGCTAACTGAGTTTATTCCTGATGCTTCACCAGAAGGAAAGCCAAAAGATGAGATTCTTGATGAAGTGCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAGATGCAGCAGAGCTTGAGGAGGTTATTAGGTCAAAGGAAGCACATTCGCGTGCTGTTGTACTTGAGAGTATAGGAGATATTCCTGATGCTGAGATCAAGCCTCCTGACAACGTGCTATTTGTTTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACTATTTTTTCACGCTTTGGGACTGTTGTGTCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAGCTGGCATGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTCAGTCAGAGTGTGGCAAAATTATGGTCACAATATAAGCGCAAAGATCAAACTGGTAAAGGTAATGGCTGCTTCAAATGTGGTTCTTCAGATCATATTGCCAAAGATTGCACTGAGGATGGTAAGAATAACCAAACGACAAAATACATCTTGAAGGACAACAATGCCCAACGTGGTGGCAATGATGCAAGGTATGAAATGGTTTTCGATGGAGATGGCGAAGATAGTCCAAGGCAAGGAAAGGGACACAGAAGGCATGACAAGGATGAGCCAATTGAGAGAAAAAGTAGGGGTCACAGGGATCAAGAGATGGTAGGCTCAGACAGCAGAGATAGGTATGGTGATAGAAACAGTGGAGGAAGATATGAAAGAGGTGCCAGAGATGTGGATTCCCGTGCGGAGAGGAAAGATAGGGATAAGTATATTGATAGACATAGAGATGATGATGGCTATGGTTGGAAAGATGATCGAGACTCTAGGAAGAGATACGAGGATGATAGCCGGAAAGAGAGACGGAGCAGTGCAGACTATCGGAGAAAGTTGGATTCTAGTTATGTGCAGAGAAGGGATGATAGGGATAAGGAGGATGGCAGAGATAGGGAGAAGAGAAAGAAGGACGGTTCAGCTGAAGATGGCCATGAAGACAAGAGGAGAATGGACATGAGAGATCATAGGACAAAGCAGGAAGACCGAGGCAGGCAAGACTCGAAGAATGAGTCCAGAGAAAGAAAGAGAAATGCAGATGATGATGAAGATTACAGACGTCAAAGGGAAGAACGTGGCCAGAGAAGGAAAGATGTGGAGTTTGACGATGATCGGCATAGGAGACATCGTAGTGACAGGAGATGA 1800 0.4294 MSVLIVTSLGDLVVDLYSDKCPLTSKNFLKLCKMKYYNGCLFHTIQKDFTAQTGDPTGIGSGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDNLDYLDGKHTVFGEVAEGLDTLTRINEAYVDENGRPYKNIRIKHTYILDDPFDDPPPLTEFIPDASPEGKPKDEILDEVRLEDDWVPMDEQLDAAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYKRKDQTGKGNGCFKCGSSDHIAKDCTEDGKNNQTTKYILKDNNAQRGGNDARYEMVFDGDGEDSPRQGKGHRRHDKDEPIERKSRGHRDQEMVGSDSRDRYGDRNSGGRYERGARDVDSRAERKDRDKYIDRHRDDDGYGWKDDRDSRKRYEDDSRKERRSSADYRRKLDSSYVQRRDDRDKEDGRDREKRKKDGSAEDGHEDKRRMDMRDHRTKQEDRGRQDSKNESRERKRNADDDEDYRRQREERGQRRKDVEFDDDRHRRHRSDRR 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01402 599 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Accr9g01402 599 Gene3D - 1 172 IPR029000 -
Accr9g01402 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Accr9g01402 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Accr9g01402 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Accr9g01402 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Accr9g01402 599 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Accr9g01402 599 CDD cyclophilin_RRM 4 162 IPR035538 -
Accr9g01402 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Accr9g01402 599 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 497 IPR035542 -
Accr9g01402 599 Gene3D - 196 326 IPR012677 -
Accr9g01402 599 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Accr9g01402 599 SUPERFAMILY RNA-binding domain, RBD 229 338 IPR035979 GO:0003676
Accr9g01402 599 SMART rrm1_1 244 317 IPR000504 GO:0003723
Accr9g01402 599 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Accr9g01402 599 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Accr9g01402 599 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Accr9g01402 599 Pfam Zinc knuckle 340 356 IPR001878 GO:0003676|GO:0008270
Accr9g01402 599 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Accr9g01402 599 ProSiteProfiles Zinc finger CCHC-type profile. 341 356 IPR001878 GO:0003676|GO:0008270
Accr9g01402 599 CDD RRM_PPIL4 240 322 - -
Accr9g01402 599 Gene3D - 333 415 - -
Accr9g01402 599 MobiDBLite consensus disorder prediction 383 599 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01402 7 166 U-box Gene Family AT5G67530 40.000 2.29e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01402 K12735 - gmx:100776900 832.787